View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18416_low_1 (Length: 633)
Name: NF18416_low_1
Description: NF18416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18416_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 17 - 621
Target Start/End: Complemental strand, 18588205 - 18587597
Alignment:
| Q |
17 |
aaataaaacaaggagtgtatgcacaaggtcatgctcaattagttgccaagaatctgaaactattgatagaaggaggagcgaaagaacgtaaattaggtac |
116 |
Q |
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| T |
18588205 |
aaataaaacaaggagtgtatgcacaaggtcatgctcaattagttgccaagaatctgaagctattgatagaaggaggagcgaaagaacgtaaattaggtac |
18588106 |
T |
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| Q |
117 |
ctacaaggcacaaccagccatatctattgtttcacttggaagaaaacatggtgttgcacaatttcctttcatgacaattgttggaaggcttcctggtatg |
216 |
Q |
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| T |
18588105 |
ttacaaggcacaaccagccatatctattgtttcacttggaagaaaacatggtgttgcacaatttcctttcatgacaattgttggaaggcttcctggtatg |
18588006 |
T |
|
| Q |
217 |
atcaaatcaggagatttgtttgttgggaaaacaagaaagggattaggacttgaacctaatgttaaaaaatcttaatttgatattgtttgcatatgattat |
316 |
Q |
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| T |
18588005 |
atcaaatcaggagatttgtttgttgggaaaacaagaaagggattaggacttgaacctaatgttaaaaaatcttaatttgatattgtgtgcatatgattat |
18587906 |
T |
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| Q |
317 |
tcaactcatttttcctggttattatttgtgtctgtttgtgttcatattgtgttttctttcagattgtattccattgaattccaatgtacctatagtagta |
416 |
Q |
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| T |
18587905 |
tcaactcatttttcctggttattatttgtgtatgtgtgtgttcatcttgtgttttctttcagattgtattccattgaattccaatgtacctgcagttgta |
18587806 |
T |
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| Q |
417 |
tttgtttatcattttgaattttgtaagttttgtgaatggaggcttttgtaagtgatgtgtatatttacctttacataatagatgatttgaattattcctt |
516 |
Q |
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| T |
18587805 |
tttgtttatcattttgaattttgtaagttttgtgaatggaggcttttgtaagtga--tgtatatttacctttacataatagatgatttgaattattcctt |
18587708 |
T |
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| Q |
517 |
ttttaggctgaaataatatttctttctattatatatactttttaaacct------tagttgtattcttcatcgtgtttaatgaagatgggtgtgttggtg |
610 |
Q |
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| T |
18587707 |
ttttgggctgaaataatatttctttctattatatatgctttttaagccttaattgtagttgtattcttcatctagattgatgaagatgggcgtgttggtg |
18587608 |
T |
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| Q |
611 |
ttgatatgatg |
621 |
Q |
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| T |
18587607 |
ttgatatgatg |
18587597 |
T |
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