View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18416_low_3 (Length: 514)

Name: NF18416_low_3
Description: NF18416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18416_low_3
NF18416_low_3
[»] chr4 (2 HSPs)
chr4 (10-216)||(2656439-2656644)
chr4 (314-487)||(11052842-11053015)
[»] chr1 (1 HSPs)
chr1 (314-499)||(50234455-50234640)
[»] chr7 (2 HSPs)
chr7 (314-499)||(1448302-1448487)
chr7 (319-487)||(34361515-34361683)
[»] chr3 (6 HSPs)
chr3 (314-487)||(46954089-46954262)
chr3 (319-487)||(26701591-26701759)
chr3 (398-466)||(39464274-39464342)
chr3 (403-466)||(21789267-21789330)
chr3 (200-238)||(50718729-50718767)
chr3 (200-238)||(50794081-50794119)
[»] chr5 (1 HSPs)
chr5 (398-466)||(31468850-31468918)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 2656439 - 2656644
Alignment:
Q  10 tacctgcataataatgatcatcaattagtaatgattatttggtccacttgttcaactgtctattttaaattgaaacttattaacatataagagacataaa 109  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2656439 tacctgcataataatgatcatcaattagtaatgatcatttggtccacttgttcaactgtctattttaaattgaaacttattaacatataagagacataaa 2656538  T
Q  110 taaaccacctcagatgattcaatcaaattttcaatcgtcatcctttttgtctttagcaaatccttagacaacgacacagtcttatgcgtggacatctggc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||||||||| |||||||||||||    
T  2656539 taaaccacctcagatgattcaatcaaattttcaatcgtcatccttttcgtctttaggaaatcctcagacaatgacacagtcttatg-gtggacatctggc 2656637  T
Q  210 tcacacc 216  Q
    |||||||    
T  2656638 tcacacc 2656644  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 314 - 487
Target Start/End: Complemental strand, 11053015 - 11052842
Alignment:
Q  314 cctaagctctaggaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggaggggatgggtggatgaagtactcctcattagaaga 413  Q
    |||| |||||||||||  |||||||||  ||||||||||| | |||| | ||||||||||||||||| |||| |||||| ||| || | || ||||||||    
T  11053015 cctaggctctaggaaagcaagttcctatagcatcattcctaagtaaatcgggaaggtcttgaggaggagatgagtggattaagcacacatcgttagaaga 11052916  T
Q  414 agctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatagtggacagtgaaattgtgcg 487  Q
    |||||| |||||||||||||||||||||||||| |||||||| | ||||||||  |||| || |||||||||||    
T  11052915 agctcctaattttgccatgaaatcagcgcattgttttccttctctgaggcaatgttggatagagaaattgtgcg 11052842  T

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Target: chr1 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 314 - 499
Target Start/End: Original strand, 50234455 - 50234640
Alignment:
Q  314 cctaagctctaggaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggaggggatgggtggatgaagtactcctcattagaaga 413  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  50234455 cctaagctctacgaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggaggggatgggtggatgaggtactactcattagaaga 50234554  T
Q  414 agctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatagtggacagtgaaattgtgcgtaacaaggagat 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50234555 agctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatggtggacagtgaaattgtgcgtaacaaggagat 50234640  T

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Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 314 - 499
Target Start/End: Complemental strand, 1448487 - 1448302
Alignment:
Q  314 cctaagctctaggaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggaggggatgggtggatgaagtactcctcattagaaga 413  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||    
T  1448487 cctaagctctaggaaaataagttcatactgcatcattccttagtaaaacaggaaggtcttgaggaggggatgggtggatgaggtactcatcattagacga 1448388  T
Q  414 agctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatagtggacagtgaaattgtgcgtaacaaggagat 499  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||    
T  1448387 agctcccaattttgccatgaaatcaacgcattggtttccttcacagaggtaatggtggacagtgaaattgtgcgtaacaaggagat 1448302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 319 - 487
Target Start/End: Complemental strand, 34361683 - 34361515
Alignment:
Q  319 gctctaggaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggaggggatgggtggatgaagtactcctcattagaagaagctc 418  Q
    |||||||||||| |||| ||||  ||||| ||||  | ||| ||  ||||||||||||| || ||||| ||||| ||| |  | |  ||||| |||||||    
T  34361683 gctctaggaaaacaagtccctatagcatcgttccggagtaagacgtgaaggtcttgaggcggagatggatggataaagcaaacattgttagaggaagctc 34361584  T
Q  419 ccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatagtggacagtgaaattgtgcg 487  Q
    | |||||||||||||||||||| |||||||||||||| | ||||||||  |||| || |||||||||||    
T  34361583 cgaattttgccatgaaatcagcacattggtttccttccctgaggcaatgttggatagagaaattgtgcg 34361515  T

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Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 314 - 487
Target Start/End: Original strand, 46954089 - 46954262
Alignment:
Q  314 cctaagctctaggaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggaggggatgggtggatgaagtactcctcattagaaga 413  Q
    |||||||||||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||| |||||| | |||||| ||||| || ||    
T  46954089 cctaagctctaggaaaataaattcctactccatcattccttagtaaatcaggaaggtcttgaggaggggatgagtggataaggtactcatcatttgacga 46954188  T
Q  414 agctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatagtggacagtgaaattgtgcg 487  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  46954189 agctcctaattttgccatgaaatcagcgcattggtttccttcacggaggcaatgctggacagtgaaattgtgcg 46954262  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 319 - 487
Target Start/End: Original strand, 26701591 - 26701759
Alignment:
Q  319 gctctaggaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggaggggatgggtggatgaagtactcctcattagaagaagctc 418  Q
    |||||||||||  |||||||||  ||||||||||| | ||||||  |||||||||||||||| ||||| ||||| ||| || | || ||||| ||||||     
T  26701591 gctctaggaaagcaagttcctatagcatcattcctaagtaaaacgtgaaggtcttgaggaggagatggatggattaagcacacatcgttagaggaagctt 26701690  T
Q  419 ccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatagtggacagtgaaattgtgcg 487  Q
    | |||||||||||||||||||| |||||||||||||| | ||||||||  |||| || |||||||||||    
T  26701691 cgaattttgccatgaaatcagcacattggtttccttctctgaggcaatgttggatagagaaattgtgcg 26701759  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 39464342 - 39464274
Alignment:
Q  398 actcctcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaat 466  Q
    |||| ||||| || ||||||||||| || |||| | |||| ||||||||||||||||||||||| ||||    
T  39464342 actcttcatttgatgaagctcccaacttagccaagtaatccgcgcattggtttccttcacggagacaat 39464274  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 466
Target Start/End: Complemental strand, 21789330 - 21789267
Alignment:
Q  403 tcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaat 466  Q
    ||||| || ||||||||||| || |||| | |||| ||||||||||||||||||||||| ||||    
T  21789330 tcatttgatgaagctcccaacttggccaagtaatccgcgcattggtttccttcacggagacaat 21789267  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 50718767 - 50718729
Alignment:
Q  200 gacatctggctcacaccttggctcatatctatatcagca 238  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  50718767 gacatctggctcacaccctgactcatatctatatcagca 50718729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 50794081 - 50794119
Alignment:
Q  200 gacatctggctcacaccttggctcatatctatatcagca 238  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  50794081 gacatctggctcacaccctgactcatatctatatcagca 50794119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 31468918 - 31468850
Alignment:
Q  398 actcctcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaat 466  Q
    |||| ||||| || ||||||||||||||||||| | |||| || ||||| |||||||||||||| ||||    
T  31468918 actcttcattcgatgaagctcccaattttgccaagtaatccgcacattgatttccttcacggagacaat 31468850  T

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