View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18416_low_4 (Length: 462)
Name: NF18416_low_4
Description: NF18416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18416_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 21312082 - 21312462
Alignment:
| Q |
16 |
atcacaaaccgagcttcccacaatctcccacgatttttgatagaagccagcagaaaaaccatccggtccaggtgccttccacggattcatattaaacaaa |
115 |
Q |
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| T |
21312082 |
atcacaaaccgagcttcccacaatctcc-acgatttttgatagaagccagcaggaaaaccatccggtccaggtgccttccacggattcatattaaacaac |
21312180 |
T |
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| Q |
116 |
gcacttctgacttcgttatcttctattggcgcactcaaacacactaacacatcctcctccaacgtaggataagtgacatttgtttgaagccactccattc |
215 |
Q |
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| T |
21312181 |
gcacttctgacttcgttatcttctattggcgcactcaaacacactaacacatcctcctccaacgtaggataagtgacatttgtttgaagccactccattc |
21312280 |
T |
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| Q |
216 |
tacaatgattattggaaaataacttcttataaaactcattaaccatgtcatgaagttgctcaacatcttctatccactgcccttgatcatctcttagcat |
315 |
Q |
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| T |
21312281 |
tacaatgattattggaaaataacttcttataaaactcattaaccatgtcatgaagttgctcaacatcttctatccactgcccttgatcatctcttagcat |
21312380 |
T |
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| Q |
316 |
gagaatatcattttttctcctt------ctagtaacagttttcaaatggtaatattgcgtattacgatcaccatcagctaac |
391 |
Q |
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| T |
21312381 |
gagaatatcattctttctccttctagacctagtaacagttttcaaatggtaatatcgcgtattacgatcaccatcagctaac |
21312462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 21312630 - 21312674
Alignment:
| Q |
399 |
cgtaaattttgaacctatagcaccgaggtccatcaaatggaacat |
443 |
Q |
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| T |
21312630 |
cgtaaattttgaacctatagcaccgaggtccatcaaatggcacat |
21312674 |
T |
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