View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18416_low_5 (Length: 451)

Name: NF18416_low_5
Description: NF18416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18416_low_5
NF18416_low_5
[»] chr3 (7 HSPs)
chr3 (1-435)||(2833303-2833743)
chr3 (346-435)||(41640822-41640911)
chr3 (348-435)||(4778032-4778119)
chr3 (346-435)||(1045380-1045468)
chr3 (351-409)||(34213151-34213209)
chr3 (348-413)||(26982060-26982125)
chr3 (357-395)||(1762039-1762077)
[»] chr2 (4 HSPs)
chr2 (346-435)||(10994430-10994519)
chr2 (347-435)||(29682700-29682788)
chr2 (348-407)||(41074597-41074656)
chr2 (349-435)||(43411515-43411601)
[»] chr7 (7 HSPs)
chr7 (346-435)||(33743470-33743559)
chr7 (349-435)||(12258376-12258462)
chr7 (344-435)||(33888612-33888703)
chr7 (348-435)||(46028447-46028534)
chr7 (348-409)||(26557857-26557918)
chr7 (363-409)||(40188220-40188266)
chr7 (348-409)||(23176935-23176996)
[»] chr1 (10 HSPs)
chr1 (346-435)||(51871201-51871290)
chr1 (352-435)||(25410580-25410663)
chr1 (348-435)||(52372670-52372757)
chr1 (346-435)||(15274345-15274434)
chr1 (349-435)||(13297595-13297681)
chr1 (348-435)||(44503962-44504049)
chr1 (349-435)||(3227657-3227743)
chr1 (348-434)||(21926619-21926704)
chr1 (348-435)||(40799651-40799738)
chr1 (349-415)||(9644372-9644438)
[»] chr4 (8 HSPs)
chr4 (346-430)||(48309635-48309719)
chr4 (348-412)||(24065130-24065194)
chr4 (363-435)||(50655082-50655154)
chr4 (348-434)||(30251406-30251492)
chr4 (348-397)||(23012386-23012435)
chr4 (363-407)||(4866794-4866838)
chr4 (363-411)||(45068156-45068204)
chr4 (357-435)||(44616668-44616746)
[»] chr8 (9 HSPs)
chr8 (348-435)||(42032733-42032820)
chr8 (346-435)||(2074810-2074899)
chr8 (346-420)||(36650452-36650526)
chr8 (348-431)||(41927020-41927103)
chr8 (357-432)||(32073942-32074017)
chr8 (348-408)||(24604837-24604897)
chr8 (363-435)||(34152026-34152098)
chr8 (349-435)||(42241236-42241322)
chr8 (346-435)||(26000097-26000186)
[»] chr6 (3 HSPs)
chr6 (346-435)||(9755672-9755761)
chr6 (363-435)||(52009-52081)
chr6 (367-435)||(9557376-9557444)
[»] chr5 (5 HSPs)
chr5 (348-413)||(41650525-41650590)
chr5 (352-434)||(33861926-33862007)
chr5 (348-409)||(27639482-27639543)
chr5 (349-435)||(3465310-3465396)
chr5 (344-385)||(33672060-33672101)
[»] scaffold0042 (1 HSPs)
scaffold0042 (349-409)||(83251-83311)
[»] scaffold0329 (1 HSPs)
scaffold0329 (348-435)||(18433-18520)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 2833743 - 2833303
Alignment:
Q  1 taatgacttataaaatgagatttattagggatgtgtgtgtagtaaagtcattaaaaacgttgtaaatgtatttcaagccaactcgattttgtcttaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833743 taatgacttataaaatgagatttattagggatgtgtgtgtagcaaagtcattaaaaacgttgtaaatgtatttcaagccaactcgattttgtcttaaatc 2833644  T
Q  101 cagtccaacatgaggcataaattatcgggttaagctagggatgggttagggacttcaaaatcatccaatcaaactttaggacatggctagggttggttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2833643 cagtccaacatgaggcataaattatcgggttaagctagggatgggttagggacttcaaaatcatccaatcaaa-tttaggacatggctagggttggttat 2833545  T
Q  201 tatccgtcccttgcgcacccctagatatcgtgttcgaaacttcaaaaatatagtt---tnnnnnnngttgtaaatacatattttcttctcacattaggga 297  Q
    ||||||||||||||||| | ||||||| ||| |||||||||||||||| ||||||           | |||||||||||||||||||||| |||||||||    
T  2833544 tatccgtcccttgcgcatctctagataccgtattcgaaacttcaaaaaaatagttaaaaaaaaaaaggtgtaaatacatattttcttctcgcattaggga 2833445  T
Q  298 aaaatgcgagaagaaaataaagttcttcatctttttgtgaggcaatgtcagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtg 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  2833444 aaaatgcgagaagaaaataaagttcttcatctttttgtgaggcaatgtcagtggtagatagagtgaaactcttagcttggaagtggttcatggctaagtg 2833345  T
Q  398 ccct----gctagttcctgctctctctatgagtgggaggtgc 435  Q
    ||||    ||||||||||||||||||||||||||||||||||    
T  2833344 ccctgctagctagttcctgctctctctatgagtgggaggtgc 2833303  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 346 - 435
Target Start/End: Original strand, 41640822 - 41640911
Alignment:
Q  346 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||||||||| ||||||||| |||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||    
T  41640822 cagtggtggacagagttaaactcttaacttggaagtggtttcgggctaagtgccctgctagttcctgctctccctatgagtgggaggtgc 41640911  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 4778032 - 4778119
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||| ||||| |||||||||| |||||||||||||  ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  4778032 gtggtggatagagttaaactcttagtttggaagtggttccaggctaggtgccctgctagtccctgctctctctatgagtgggaggtgc 4778119  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 346 - 435
Target Start/End: Complemental strand, 1045468 - 1045380
Alignment:
Q  346 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||| || || ||||||| |||||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||    
T  1045468 cagtggtggatagggttaaactctcagcttggaagtggttcctggctaagtgccctgctagttcttgttctctctatgag-gggaggtgc 1045380  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 34213151 - 34213209
Alignment:
Q  351 gtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttc 409  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34213151 gtggatagagtgaaactcttagcttggaagtggttcatggctaagtgccatgctagttc 34213209  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 26982125 - 26982060
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgc 413  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  26982125 gtggtggatagagtaaaactcttagcttggaagtggttcttggctaagtgccctgcaagttcctgc 26982060  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 1762077 - 1762039
Alignment:
Q  357 agagtgaaactcttagcttggaagtggttcatggctaag 395  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  1762077 agagcgaaactcttagcttggaagtggttcatggctaag 1762039  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 346 - 435
Target Start/End: Original strand, 10994430 - 10994519
Alignment:
Q  346 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||    
T  10994430 cagtggtggatagagttaaactcttagcttggaagtggttcctggctaagtgccctgctagttcccgttctctctatgagtgggaggtgc 10994519  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 29682700 - 29682788
Alignment:
Q  347 agtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    ||||||||| ||||| ||||||||||||| ||||||||||  |||||||  |||||||| | |||| ||||||| ||||||||||||||    
T  29682700 agtggtggatagagttaaactcttagcttagaagtggttccaggctaagcaccctgctaatccctgttctctctttgagtgggaggtgc 29682788  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 348 - 407
Target Start/End: Complemental strand, 41074656 - 41074597
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagt 407  Q
    |||||||||| || ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  41074656 gtggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgctagt 41074597  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 43411515 - 43411601
Alignment:
Q  349 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    ||||||| |||| ||||||||||||||| ||||| ||| |||||||||| |||||||| |||||| ||    |||||||||||||||    
T  43411515 tggtggatagagcgaaactcttagcttgaaagtgtttcctggctaagtgtcctgctagctcctgcacttatcatgagtgggaggtgc 43411601  T

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Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 346 - 435
Target Start/End: Original strand, 33743470 - 33743559
Alignment:
Q  346 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||    
T  33743470 cagtggtggacagagttaaaatcttagcttgaaagtggttcttggctaagtgccctgctagtccctgttctctctatgagtgggaggtgc 33743559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 12258376 - 12258462
Alignment:
Q  349 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    ||||||| ||||| |||||||||||||| ||||||||| |||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  12258376 tggtggatagagttaaactcttagcttgaaagtggttcctggctaagtgtcctgccagtccctgctctctctatgagtgggaggtgc 12258462  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 435
Target Start/End: Original strand, 33888612 - 33888703
Alignment:
Q  344 gtcagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||||| |||||| ||||||||| ||||||||||||   ||||||||||||||||||||| |  ||||||||||||||| ||||||    
T  33888612 gtcagtggtggatagagtggaactcttagattggaagtggtttcgggctaagtgccctgctagttcatattctctctatgagtggaaggtgc 33888703  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 435
Target Start/End: Complemental strand, 46028534 - 46028447
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||||||| |||||||||| || |||  | ||| ||||||||||||    
T  46028534 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgtcctgctagtttctactccttttataagtgggaggtgc 46028447  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 26557918 - 26557857
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttc 409  Q
    |||||||||||||| ||||| ||||||||| ||||| || ||||||||||||||||||||||    
T  26557918 gtggtggacagagttaaacttttagcttggtagtggctcctggctaagtgccctgctagttc 26557857  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 409
Target Start/End: Complemental strand, 40188266 - 40188220
Alignment:
Q  363 aaactcttagcttggaagtggttcatggctaagtgccctgctagttc 409  Q
    |||||| ||||||||||||||||| || |||||||||||||||||||    
T  40188266 aaactcatagcttggaagtggttcttgcctaagtgccctgctagttc 40188220  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 23176996 - 23176935
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttc 409  Q
    |||||| | |||||||||||||||||||||||| ||||| | || ||||| | |||||||||    
T  23176996 gtggtgtatagagtgaaactcttagcttggaagcggttccttgccaagtgtcatgctagttc 23176935  T

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Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 346 - 435
Target Start/End: Original strand, 51871201 - 51871290
Alignment:
Q  346 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||| ||| | |||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||    
T  51871201 cagtggtggatagaattaaactcttagcttggaagtggttcctgactaagtgccctgctagttcctgttctctctatgagtgggaggtgc 51871290  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 25410663 - 25410580
Alignment:
Q  352 tggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||||||||||||||    
T  25410663 tggatagagtgaaactcttagcttggaagtggttcctggctaagtaccttgctagttcctgctctttctatgagtgggaggtgc 25410580  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 52372670 - 52372757
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||| |||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||||    
T  52372670 gtggtggatagagcgaaactcttagcttagaagtggttcctggctaggtgccctgctagttcctgctctttttatgagtgggaggtgc 52372757  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 346 - 435
Target Start/End: Original strand, 15274345 - 15274434
Alignment:
Q  346 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||||||||||||||| |||||||| ||||| ||| | |||||||| ||||||||||| || ||||||||||||||||||||||    
T  15274345 cagtggtggacagagtgaaacttttagcttgtaagtgattcctagctaagtgtcctgctagttcatgttctctctatgagtgggaggtgc 15274434  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 13297595 - 13297681
Alignment:
Q  349 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    ||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||    |||||||||||||||    
T  13297595 tggtggatagagtgaaactcttagcttgaaattggttcatggctaagtgtcctgctagttcctgcacttatcatgagtgggaggtgc 13297681  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 435
Target Start/End: Complemental strand, 44504049 - 44503962
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||| | |||||| |||||||||||||||||||||||| ||||||| | || ||||||||||||| |  |||||||||||||||    
T  44504049 gtggtggataaagtgaagctcttagcttggaagtggttcatgactaagtgtcgtggtagttcctgctcttttcatgagtgggaggtgc 44503962  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 3227743 - 3227657
Alignment:
Q  349 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    ||||||||| ||| |||||||||||||| ||||| ||| ||| ||||||||||||||||  ||| ||||||||||||||||| ||||    
T  3227743 tggtggacatagttaaactcttagcttgaaagtgattcctggttaagtgccctgctagtctctgttctctctatgagtgggaagtgc 3227657  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 21926619 - 21926704
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtg 434  Q
    |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| || |||    ||||||||||||||    
T  21926619 gtggtggatagagtgaaactcttagcctggaagtggttc-tggctaagtgccctgctagttcatgttcttatcatgagtgggaggtg 21926704  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 40799651 - 40799738
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||| |||||||||||||| ||||| |||| |||| | |||||||||  ||||||||| |||||| |  |||||||||||||||    
T  40799651 gtggtggatagagtgaaactcttggcttgaaagttgttcctagctaagtgcattgctagttcttgctcttttcatgagtgggaggtgc 40799738  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 9644372 - 9644438
Alignment:
Q  349 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctc 415  Q
    ||||||| |||| ||||||||| | ||||||||||||| | |||||||| ||| ||||||| |||||    
T  9644372 tggtggatagagcgaaactcttgggttggaagtggttcctagctaagtgtcctactagttcttgctc 9644438  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 346 - 430
Target Start/End: Complemental strand, 48309719 - 48309635
Alignment:
Q  346 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtggga 430  Q
    |||||||||| ||||||||||||||||||||||||| ||||  ||||||||  |||||||||||||| |||||||||||||||||    
T  48309719 cagtggtggatagagtgaaactcttagcttggaagtcgttccgggctaagtttcctgctagttcctgttctctctatgagtggga 48309635  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 24065194 - 24065130
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctg 412  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||||| |||||||||||||||    
T  24065194 gtggtggatagagtgaaactcttaacctggaagtggttcatggctaagtaccctgctagttcctg 24065130  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 50655154 - 50655082
Alignment:
Q  363 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| |||| | || |||||||||||||||    
T  50655154 aaactcttagcttggaagtggttcctggctaagtgtcctgctagttcttgctttttccatgagtgggaggtgc 50655082  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 434
Target Start/End: Complemental strand, 30251492 - 30251406
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtg 434  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||  ||||| |||||| |  ||||||||||||||    
T  30251492 gtggtggatagagtgaaactcttggcttgaaagtggttcctggctaagtgccctggaagttcttgctctgttcatgagtgggaggtg 30251406  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 23012435 - 23012386
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtg 397  Q
    |||||||| |||||||||||||||| |||||| |||||||||||||||||    
T  23012435 gtggtggatagagtgaaactcttagtttggaattggttcatggctaagtg 23012386  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 4866794 - 4866838
Alignment:
Q  363 aaactcttagcttggaagtggttcatggctaagtgccctgctagt 407  Q
    |||||||||||||||||||||||| |||||||||||| |||||||    
T  4866794 aaactcttagcttggaagtggttcctggctaagtgccttgctagt 4866838  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 45068204 - 45068156
Alignment:
Q  363 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcct 411  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||    
T  45068204 aaactcttagcttggaagtggttcctggctaagtgccctggcagttcct 45068156  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 44616746 - 44616668
Alignment:
Q  357 agagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||| ||| ||||||||||| |||||| ||||||||||| ||| ||||| ||| ||| ||  | |||||||||||||||    
T  44616746 agagagaagctcttagcttgtaagtggctcatggctaagggccttgctaattcttgcacttacgatgagtgggaggtgc 44616668  T

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Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 42032733 - 42032820
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||| | |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||  | ||||||||||||||||    
T  42032733 gtggtgaatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctacttcctgctccttttatgagtgggaggtgc 42032820  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 346 - 435
Target Start/End: Complemental strand, 2074899 - 2074810
Alignment:
Q  346 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||| | ||| |||||||||| || ||||| ||||  |||||||||||||||||||||||| ||||||||||||||||||||||    
T  2074899 cagtggtggatatagttaaactcttagttttgaagttgttccaggctaagtgccctgctagttcctgttctctctatgagtgggaggtgc 2074810  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 346 - 420
Target Start/End: Complemental strand, 36650526 - 36650452
Alignment:
Q  346 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctct 420  Q
    |||||||||||||||| ||||||||||||||| ||||||||  ||||||||| | ||||||||||||||||||||    
T  36650526 cagtggtggacagagttaaactcttagcttgggagtggttccgggctaagtgtcttgctagttcctgctctctct 36650452  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 431
Target Start/End: Original strand, 41927020 - 41927103
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggag 431  Q
    |||||||| |||| ||| ||||||||||||||||||||| |||||||||||| ||| | |||||||| | ||||||||||||||    
T  41927020 gtggtggatagagcgaatctcttagcttggaagtggttcctggctaagtgccgtgcaaattcctgctttttctatgagtgggag 41927103  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 432
Target Start/End: Complemental strand, 32074017 - 32073942
Alignment:
Q  357 agagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggagg 432  Q
    |||||||||||||||| ||||||||| ||  |||||||||| ||| |||||||||||||  | |||||||||||||    
T  32074017 agagtgaaactcttagtttggaagtgatttctggctaagtgtcctactagttcctgctccttttatgagtgggagg 32073942  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 24604837 - 24604897
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagtt 408  Q
    |||||||| |||| ||||||||||| ||| ||||||||| |||||||||| ||||||||||    
T  24604837 gtggtggatagagcgaaactcttagattgaaagtggttcttggctaagtggcctgctagtt 24604897  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 34152098 - 34152026
Alignment:
Q  363 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||||||||||||||||| |||||||| |||||   ||||||||| || |  |||||||||||||||    
T  34152098 aaactcttagcttggaagtggttcctggctaagcgccctagcagttcctgcacttttcatgagtgggaggtgc 34152026  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 42241322 - 42241236
Alignment:
Q  349 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    ||||||| | || ||||||||||||||||||||||||| |||| ||| || || ||||||||||| ||  |  ||||||||||||||    
T  42241322 tggtggataaagcgaaactcttagcttggaagtggttcctggcgaagcgctctactagttcctgcacttaccttgagtgggaggtgc 42241236  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 435
Target Start/End: Original strand, 26000097 - 26000186
Alignment:
Q  346 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    ||||||||||  |||| ||||| |||||||| |||||||||  | |||||| || || ||||  ||| ||||||||||||||||||||||    
T  26000097 cagtggtggatggagttaaacttttagcttgaaagtggttctagactaagttccatgttagtctctgttctctctatgagtgggaggtgc 26000186  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 435
Target Start/End: Complemental strand, 9755761 - 9755672
Alignment:
Q  346 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||||| |||||||||||||| ||||||||||||   ||||||||||||||||||||| || |||||| |||| || |||||||    
T  9755761 cagtggtggacaaagtgaaactcttagtttggaagtggtttcgggctaagtgccctgctagttcatgttctctccatgaatgagaggtgc 9755672  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 435
Target Start/End: Original strand, 52009 - 52081
Alignment:
Q  363 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||| ||| || | ||||||||||||||||    
T  52009 aaactcttagcttggaagtggttcctggctaagtgtcttgctagttcttgcactttatatgagtgggaggtgc 52081  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 435
Target Start/End: Complemental strand, 9557444 - 9557376
Alignment:
Q  367 tcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||||||||||| ||| || ||||||| |||||||| |||||| ||    |||||||||||||||    
T  9557444 tcttagcttggaagtgattcctgactaagtgtcctgctagctcctgcacttatcatgagtgggaggtgc 9557376  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 41650525 - 41650590
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgc 413  Q
    |||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  41650525 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgctctgctagctcctgc 41650590  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 434
Target Start/End: Original strand, 33861926 - 33862007
Alignment:
Q  352 tggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtg 434  Q
    |||| ||||||||||| || |||||||||||| ||  |||||||||||||| ||||||||||||| |  ||||||||||||||    
T  33861926 tggatagagtgaaact-ttggcttggaagtggctcccggctaagtgccctggtagttcctgctcttttcatgagtgggaggtg 33862007  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 27639543 - 27639482
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttc 409  Q
    |||||||| ||||  ||| |||||||||||||||||||||||||||| || |||||||||||    
T  27639543 gtggtggatagagcaaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 27639482  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 3465396 - 3465310
Alignment:
Q  349 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    ||||||| |||| ||||||||||||||||||||| ||| |||| ||| |  || ||||||||||| ||  | |||||||||||||||    
T  3465396 tggtggatagagcgaaactcttagcttggaagtgtttcttggcgaagcgttctactagttcctgcacttaccatgagtgggaggtgc 3465310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 33672060 - 33672101
Alignment:
Q  344 gtcagtggtggacagagtgaaactcttagcttggaagtggtt 385  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  33672060 gtcagtggtggacaaagttaaactcttagcttggaagtggtt 33672101  T

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Target: scaffold0042 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 83311 - 83251
Alignment:
Q  349 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttc 409  Q
    ||||||| | ||| ||||||||||||||||||||||||||| | ||||| |||||||||||    
T  83311 tggtggataaagtcaaactcttagcttggaagtggttcatgccgaagtgtcctgctagttc 83251  T

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Target: scaffold0329 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 435
Target Start/End: Complemental strand, 18520 - 18433
Alignment:
Q  348 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgc 435  Q
    |||||||| |||| ||||||| ||| ||| ||||| |||  ||||||||||||||||||||||||| ||    |||||||||||||||    
T  18520 gtggtggatagagcgaaactcatagtttgaaagtgattctgggctaagtgccctgctagttcctgcacttatcatgagtgggaggtgc 18433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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