View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18416_low_6 (Length: 347)
Name: NF18416_low_6
Description: NF18416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18416_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 9447521 - 9447836
Alignment:
| Q |
20 |
caactctccaattcactttcaaatagtaattatttacaaagagatataagagttacgagaaattagactttttcaagttctgtaagaccaaacataattt |
119 |
Q |
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| T |
9447521 |
caactctccaatttactttcaaatagtaattatttacaaagagatataagagttacgagaaaatagactttttcaagttctgtacgaccaaacataattt |
9447620 |
T |
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| Q |
120 |
ataccatttttctcaaatctctctctttggcctaaacactcaatgatttatccccataatggtttaaattgtttcccaaccttagaatatccctaaaagc |
219 |
Q |
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| T |
9447621 |
ataccatttttctcaaatctctctct--ggcctaaacactcaatgatttatccccataatggtttaaattgtttcccaaccttagaatatccctaaaagc |
9447718 |
T |
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| Q |
220 |
tctcaacttttaaccctacaagttgtcacttttaaaaccctaaatatcccacttttccgtctcttctcaaaattgaaaaacaacaccttatattaatagg |
319 |
Q |
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| T |
9447719 |
tctcaacttttaaccctacaaattgtcacttttgaaaccctaaatatcccacttttccgtctcttctcaaaattgaaaaacaacaccttatattaatagg |
9447818 |
T |
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| Q |
320 |
catcacttagagcttcat |
337 |
Q |
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|||||||| ||||||||| |
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| T |
9447819 |
catcacttggagcttcat |
9447836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 9432471 - 9432526
Alignment:
| Q |
52 |
tttacaaagagatataagagttacgagaaattagac-tttttcaagttctgtaaga |
106 |
Q |
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|||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||| |
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| T |
9432471 |
tttacaaagagatataagagttacaagaaattagtcttttttcaagttctataaga |
9432526 |
T |
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