View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18416_low_7 (Length: 326)
Name: NF18416_low_7
Description: NF18416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18416_low_7 |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 42415189 - 42414892
Alignment:
| Q |
1 |
aaatgctatcacctactattttgcattctagttctataagccccttcgacagtcctattcttccaagccagtagatggcatcatgcaatccaactgcttc |
100 |
Q |
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||||||||||| | |||| |||||| |||||||||| |||| ||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
42415189 |
aaatgctatcaaccactagtttgcaatctagttctacaagcaccttcgacagtcctaatctgccaagccaagagatggcatcacgcaatccaactgcttc |
42415090 |
T |
|
| Q |
101 |
tgcttctcgtgggagaggtttgccttcataccagattgtggctgcctttacgaacgtacctcgatgattccgaatgcacgtacctatcccaaaacagttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42415089 |
tgcttctcgtgggagaggtttgccttcataccagattgtggctgcctttacgaacatacctcgatgattccgaatgcacatacctatcccaaaacagttt |
42414990 |
T |
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| Q |
201 |
tgctccttgaacatggctgcgtccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgctgctgctgattttgaacaggttc |
298 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42414989 |
tgctcctcgaacatggctgcgtccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgctgctgctgattttgcacaggttc |
42414892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 15153 - 14856
Alignment:
| Q |
1 |
aaatgctatcacctactattttgcattctagttctataagccccttcgacagtcctattcttccaagccagtagatggcatcatgcaatccaactgcttc |
100 |
Q |
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||||||||||| | |||| |||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||| |||| |||||||||||||||| |
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| T |
15153 |
aaatgctatcaaccactagtttgcaatctagttctataagcaccttcgacagtcctaatcttccaagccaagagatgaaatcacgcaatccaactgcttc |
15054 |
T |
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| Q |
101 |
tgcttctcgtgggagaggtttgccttcataccagattgtggctgcctttacgaacgtacctcgatgattccgaatgcacgtacctatcccaaaacagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
15053 |
tgcttctcgtgggagaggtttgccttcataccagattgcggctgcctttacgaacatacctcgatgattccgaatgcacatacctatcccaaaatagttt |
14954 |
T |
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| Q |
201 |
tgctccttgaacatggctgcgtccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgctgctgctgattttgaacaggttc |
298 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14953 |
tgctcctcgaacatggctgcgtccacgttgcatttaacaaacttctcatctggtggctgccaaattgctacttgctgctgctgattttgcacaggttc |
14856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 53920214 - 53919917
Alignment:
| Q |
1 |
aaatgctatcacctactattttgcattctagttctataagccccttcgacagtcctattcttccaagccagtagatggcatcatgcaatccaactgcttc |
100 |
Q |
| |
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||||||||||| |||| |||||| || |||||||||||| ||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
53920214 |
aaatgctatcaaacactagtttgcaatccagttctataagcaccttcgacagtcctaatctgccaagccaagagatggcatcacgcaatccaactgcttc |
53920115 |
T |
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| Q |
101 |
tgcttctcgtgggagaggtttgccttcataccagattgtggctgcctttacgaacgtacctcgatgattccgaatgcacgtacctatcccaaaacagttt |
200 |
Q |
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| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53920114 |
ttcttctcgtgggagaggtttgccttcataccaggttgtagctgcctttacgaacagacctcgatgattccgaatgcacatacctatcccaaaacagttt |
53920015 |
T |
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| Q |
201 |
tgctccttgaacatggctgcgtccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgctgctgctgattttgaacaggttc |
298 |
Q |
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| T |
53920014 |
tgctcctcgaacatggctgcatccacgttgcatttaacaaactcctcatctggtggctgccaaattgctacttgctgctactgattttgcacaggttc |
53919917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 35581597 - 35581743
Alignment:
| Q |
3 |
atgctatcacctactattttgcattctagttctataagccccttcgacagtcctattcttccaagccagtagatggcatcatgcaatccaactgcttctg |
102 |
Q |
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||||||||| |||||| || ||| |||||||||||| || |||| || ||||| | |||||||| || || |||||||| ||||| |||||||| | |
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| T |
35581597 |
atgctatcaactactacttggcaatctagttctatatgcacctttgatggtcctcatagaccaagccaataaatagcatcatgtaatcctactgcttccg |
35581696 |
T |
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| Q |
103 |
cttctcgtgggagaggtttgccttcataccagattgtggctgccttt |
149 |
Q |
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||||| |||| |||| |||||||||| ||| |||||||||||||| |
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| T |
35581697 |
cttcttttgggggaggattgccttcatgccaagttgtggctgccttt |
35581743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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