View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18417_high_14 (Length: 523)
Name: NF18417_high_14
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_14 |
 | |
|
| [»] scaffold0174 (1 HSPs) |
| | |
|
| [»] scaffold0201 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 257 - 518
Target Start/End: Complemental strand, 23460171 - 23459910
Alignment:
| Q |
257 |
cagtgtcattgttcttgatcattgaaggtagcaatttcgctttcttctaacaccttctgcttcgtcactaaatgaattgtcggtcttcttcctctttttc |
356 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23460171 |
cagtgtcaatgttcttgatcattgaagatagcaatgctgctttcttctaacatcttctgcttcgtcattaaatgaattgtcggtcttcttcctctttttc |
23460072 |
T |
|
| Q |
357 |
tccctattgcagtagctactcgagtttcacgattttgagtcataagaaagaaagataagaagaataataatggttctgttaagggtcttttctttttaaa |
456 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
23460071 |
tccctattgcagtagctacttgagtttcatgattttgagtcataagaaataaagataagaagaataataatggttctgttaatggtctttcctttttaaa |
23459972 |
T |
|
| Q |
457 |
tgatacagatcaaagatcttgattttcccaaaaaataatatagtgtttgtagtctctctgct |
518 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
23459971 |
tgatacagatcaaagatcttggttttcccacaaaataatatagtgtttgtaatctctctgct |
23459910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 216 - 483
Target Start/End: Complemental strand, 23497275 - 23497020
Alignment:
| Q |
216 |
tttcataattttgtgtatagatccctattcattttcctcagcagtgtcattgttcttgatcattgaaggtagcaatttcgctttcttctaacaccttctg |
315 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||| ||||||| | |||||||| ||| |||||| |
|
|
| T |
23497275 |
tttcataattttgtgtatagatctctatttattttcctcagcaatgtcattg-------------aagctagcaataccactttcttcaaacttcttctg |
23497189 |
T |
|
| Q |
316 |
cttcgtcactaaatgaattgtcggtcttcttcctctttttctccctattgcagta--gctactcgagtttcacgattttgagtcataaga-aagaaagat |
412 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||| |||| || | |||||||| |
|
|
| T |
23497188 |
cttcatcactaaatgaatcgtctttcttcttcct--ttttctccctattgcagtatagctactcaagtttcatgattttgtgtcaaaaaagaagaaagac |
23497091 |
T |
|
| Q |
413 |
aagaagaataataatggttctgttaagggtcttttctttttaaatgatacagatcaaagatcttgattttc |
483 |
Q |
| |
|
||||||||| |||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23497090 |
aagaagaatgataatggttctgttgatggtctttcctttttaaatgatacagatcaaagatcttggttttc |
23497020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 23460932 - 23460762
Alignment:
| Q |
78 |
tatacctttgtagaagtattcctaattt-attcagcatttctgtgctgtgattgctggtattaatcaatatgatcctgtttttattgttggtacgtttgt |
176 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23460932 |
tatacctttgcagaagtattcctaattttattcagcagttctgtgctgtgattgctggtattaatcaatctgatcctgtttttattgttggt-------- |
23460841 |
T |
|
| Q |
177 |
acaccaaataaataatcagctataaccaggtttgcagcgtttcataattttgtgtatagatccctattcattttcctcagcagtgt |
262 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
23460840 |
-------ataagtagtcagctataaccaggtttgcagcgtttcataattttgtgtaaagatccccattcattttccttagcagtgt |
23460762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 23461313 - 23461255
Alignment:
| Q |
17 |
cagtagactggtattaaattcatcatttaaatgactaagtgcaatgatatgttttgcta |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
23461313 |
cagtagactggtattaaattcatcatttaaatgcctaagtgcaatgatacgttgtgcta |
23461255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 23433418 - 23433377
Alignment:
| Q |
24 |
ctggtattaaattcatcatttaaatgactaagtgcaatgata |
65 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
23433418 |
ctggtattaaattcatcatttaaatgcccaagtgcagtgata |
23433377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 421
Target Start/End: Complemental strand, 22956 - 22863
Alignment:
| Q |
326 |
aaatgaattgtcggtcttcttcctctttttctccctattgcagtagctactcgagtttcacgattttgagtcataagaaagaaagataagaagaat |
421 |
Q |
| |
|
|||||||||||| ||||||||||| || |||| | |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22956 |
aaatgaattgtcaatcttcttcctcgtt--ctccgtgttgcagtagccactcgattttcatgattttgagtcataagaaagaaagataagaagaat |
22863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 8232 - 8158
Alignment:
| Q |
354 |
ttctccctattgcagtagctac----tcgagtttcacgattttgagtcataagaaagaaagataagaagaataat |
424 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| | |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
8232 |
ttctccctatcgcagtagctacgtactcgagtttcatggttttttgtcataagatagaaagataagaagaataat |
8158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University