View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_16 (Length: 472)
Name: NF18417_high_16
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 220 - 457
Target Start/End: Original strand, 19974357 - 19974599
Alignment:
| Q |
220 |
aggggaattaaatagacaaa-----agcacacgaaacatacaaggttgcatcattatgatgacttgaaaaatccttgagcttagcttgattatcggcagt |
314 |
Q |
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| T |
19974357 |
aggggaattaaatagacaaactgtgagcacacgatacatacaaggttacatcattatgatgacttgaaaaatccttgagcttagcctgattatcggcagt |
19974456 |
T |
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| Q |
315 |
attagatgcatgaacagcagaacctagacaaaccgcaaccaaaaaacaaccaactcctgggaaaagaatctcggctttattgattttgtcatccaaaaag |
414 |
Q |
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| T |
19974457 |
attagatgcatgaacagccgagcctagacaaaccgcaaccaaaaagcaacccactccagggaaaagaatctcggctttattgattttgtcgtccaaaaag |
19974556 |
T |
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| Q |
415 |
taatttaaggttgtgcctgtgacaagttgaacaaagttaatac |
457 |
Q |
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| T |
19974557 |
taatttaaggttgtgcctgtgacaagttgaacaaagttaatac |
19974599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 292 - 455
Target Start/End: Complemental strand, 19622187 - 19622024
Alignment:
| Q |
292 |
agcttagcttgattatcggcagtattagatgcatgaacagcagaacctagacaaaccgcaaccaaaaaacaaccaactcctgggaaaagaatctcggctt |
391 |
Q |
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| T |
19622187 |
agcttagcctgattatcagcagtattagatgaatgaacagcagagcctaaacaaactgcaactaaaaagcaaccaactcctggaaaaagaatctcagctt |
19622088 |
T |
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| Q |
392 |
tattgattttgtcatccaaaaagtaatttaaggttgtgcctgtgacaagttgaacaaagttaat |
455 |
Q |
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| T |
19622087 |
tattgattttgtcatccaaaaaataattcaatgttgtgcctgtgacaaattcaacaaagttaat |
19622024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 19974190 - 19974300
Alignment:
| Q |
88 |
atagtagcaatctatgatagttcccgaagtagcaattcctatttttgtttctaaacagtttgtaaataagggacttttctttctttcttttaaaaggaaa |
187 |
Q |
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| T |
19974190 |
atagtagctagctatgatagttcccaaagtggcaattcctatttttgtttctaaaaagtgtgtaaataagggacttttctttctttcttttaaaaggaaa |
19974289 |
T |
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| Q |
188 |
aggcataaggt |
198 |
Q |
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| T |
19974290 |
aggcataaggt |
19974300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 282 - 419
Target Start/End: Complemental strand, 19978528 - 19978391
Alignment:
| Q |
282 |
aaaatccttgagcttagcttgattatcggcagtattagatgcatgaacagcagaacctagacaaaccgcaaccaaaaaacaaccaactcctgggaaaaga |
381 |
Q |
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| T |
19978528 |
aaaatccttgagcttagcctgattatcagcaatatttgaagaatgaagaaaatagccaaggcaaactgcaacaaaaaagcaaccaactcctggaaaaaga |
19978429 |
T |
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| Q |
382 |
atctcggctttattgattttgtcatccaaaaagtaatt |
419 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
19978428 |
atctcagctttattgattttgtcatccaaaaagtaatt |
19978391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 19973949 - 19973996
Alignment:
| Q |
16 |
atcaagaaattaaaatcaccaaagcaactgaaattcagaactagatga |
63 |
Q |
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| T |
19973949 |
atcaagaaactaaaatcaccaaagcaactgaaattcagaactagatga |
19973996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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