View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_17 (Length: 465)
Name: NF18417_high_17
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 40745422 - 40745842
Alignment:
| Q |
11 |
cacagagttcaattttgggaccctgacgaagactatgacagagacagagtatcacggacggtcctatcagtcttgcattgggaaaagattggtccaccat |
110 |
Q |
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| T |
40745422 |
cacagagttcaattttgggaccctgacgaagactatgacagagacagagtatcacggacggtcctatcagtcttgcattgggaaaagattggtccaccat |
40745521 |
T |
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| Q |
111 |
aacactgtcactgtgtgtgcatgaatgctcctctgacgctgacctacaatctgttacagtgtctcgcatgctaaaaaggaaccttcactgtaattatggc |
210 |
Q |
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| T |
40745522 |
aacactgtcactgtgtgtgcatgaatgctcctctgacgctgacctacaatctgttacagtgtctcgcatgctaaaaaggaaccttcactgtaattatggc |
40745621 |
T |
|
| Q |
211 |
ttaatcattcaatactagcttataaaggcaagtagcttttctgttacccctcgtattcaagaacaccgtcgttgttttagcctttttatgtacaaacagt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40745622 |
ttaatcattcaatactagcttataaaggcaagtagcttttctgttacccctcgtattcaagaacaccgtcgttgttttaacctttttatgtacaaacagt |
40745721 |
T |
|
| Q |
311 |
gctggtactactattcacttttcaacgtgtacacatgaccatttatgcaactttatttacttcttcgagtttggtgtatagatagaccaaatttaataaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40745722 |
gctggtactactattcacttttcaacgtgtacacatgaccattgatgcaactttatttacttcttcgagtttggtgtatagatagaccaaatttaataaa |
40745821 |
T |
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| Q |
411 |
agatcatgaagaagagaaagt |
431 |
Q |
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|| ||||| ||||||| |||| |
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| T |
40745822 |
agttcatgtagaagaggaagt |
40745842 |
T |
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