View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_19 (Length: 446)
Name: NF18417_high_19
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 44452878 - 44453322
Alignment:
| Q |
1 |
catatagtaaatgtcatcatctctactctcttctcaattgttaccagcaatcagcaattcagcatcaatcaaacaagtcctaattgatgataacattatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44452878 |
catatagtaaatgtcatcatctctactctcttctcaattgtcaccagcaatcagcaattcagcatcaatcaaacaagtcctaattgatgataacattatt |
44452977 |
T |
|
| Q |
101 |
atacagtcttcattaataactcttgttctgaaattttaaacctatataacttcaatctctttgcaggtggaattcttgctcactaacttatgtgatacgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44452978 |
atacagtcttcattaataactcttgttctgaaattttaaacctatataacttcaatctctttgcaggtggaattcttgctcactaacttatgtgatacgg |
44453077 |
T |
|
| Q |
201 |
catcaattggagagctagaattaaaagtaagctatcatgctgatcaatgaatttattctcttcataagcacaatatttttcacgtactctattaaatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44453078 |
catcaattggagagctagaattaaaagtaagctatcatgctgatcaatgaatttattctcttcataagcacaatatttttcacgtactctattaaatctt |
44453177 |
T |
|
| Q |
301 |
gcttcctttgttgtttcttcttcattaccatctgcctaacctccaaatatatatcagcttgatggatttcacctgcgtgtagtgagggatttgactgaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44453178 |
gcttcctttgttgtttcttcttcattaccatctgcctaacctccaaatatatatcagcttgatggatttcacctgcgtgtagtgagggatttgactgaaa |
44453277 |
T |
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| Q |
401 |
aatctaaaacacttcctccttcaattcctgctcctgtaagtataa |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44453278 |
aatctaaaacacttcctccttcaattcctgctcctgtaagtataa |
44453322 |
T |
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