View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18417_high_21 (Length: 440)
Name: NF18417_high_21
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_21 |
 | |
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| [»] chr8 (5 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 10382075 - 10382498
Alignment:
| Q |
18 |
aaagtttactttagtggttagattaatttgagaacacaattttattatacactactaatactagannnnnnnnn--------acaccttccaccactctt |
109 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||| |||||||||| || |||||||| | |||||||||||||||||| |
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| T |
10382075 |
aaagtttactttagttgttagattaatttgaaaacacaatcttattatacaatattaatactaaattttttttactttttttacaccttccaccactctt |
10382174 |
T |
|
| Q |
110 |
ctctctccttcctccccagcaccagcaacatctaactcaccaccggatgttttcttctattccgagcaacaaaaaggtttgggtcctgctgtgtttctaa |
209 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10382175 |
ctctctccttcctccccactaccagcaacatctacctcaccaccggatgttttcttctattccgagcaacaaaaaggtttgggtcctgctgtgtttctaa |
10382274 |
T |
|
| Q |
210 |
ccaacttagaagcaaattggtaatgctcttgtgaaaattagctataatgagtatcaaatagcaacaaaaatagaatctctattctctagtactgtatttc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
10382275 |
ccaacttagaagcaaattggtaatgctcttgtgaaaattaactataatgagtatcaaatagcaacaaaaatagaa-------tatctagtactgtatttc |
10382367 |
T |
|
| Q |
310 |
aactagtgttcacttctaatactcaatctatataccaacccttcaacccttttatatacactgattagtcacatctcttctataaaacaccaacacagta |
409 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
10382368 |
aacaagtgttcacttctaatactcaatctatataccaacccttcaaaccttttatatacagtgattagtcatatctctcctataaaacaccaacacagta |
10382467 |
T |
|
| Q |
410 |
cacaaaagcacacattggacacgagtgagac |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
10382468 |
cacaaaagcacacattggacacgagtgagac |
10382498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 92 - 440
Target Start/End: Complemental strand, 9484903 - 9484562
Alignment:
| Q |
92 |
acaccttccaccactcttctctctccttcctccccagcaccagcaacatctaactcaccaccggatgttttcttctattccgagcaacaaaaaggtttgg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9484903 |
acaccttccaccactcttctctctccttcctccccaccaccagcaacatctaactcaccaccggatgttttcttctattccgagcaacaaaaaggtttgt |
9484804 |
T |
|
| Q |
192 |
gtcctgctgtgtttctaaccaacttagaagcaaattggtaatgctcttgtgaaaattagctataatgagtatcaaatagcaacaaaaatagaatctctat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
9484803 |
gtcctgctgtgtttctaaccaacttagaagcaaattggtaatgctcttgtgaaaattaactataatgagtatcaaatagcaacaaaaatagaa------- |
9484711 |
T |
|
| Q |
292 |
tctctagtactgtatttcaactagtgttcacttctaatactcaatctatataccaacccttcaacccttttatatacactgattagtcacatctcttcta |
391 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| |||||| ||| |
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|
| T |
9484710 |
tatctagtactgtatttcaacaagtgttcacttctaatactcaatttatataccaacccttcaaaccttttatatacagtgattagtcatatctctccta |
9484611 |
T |
|
| Q |
392 |
taaaacaccaacacagtacacaaaagcacacattggacacgagtgagac |
440 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
9484610 |
taaaacaccaacacagtacactgaagtacacattggacatgagtgagac |
9484562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 9484989 - 9484934
Alignment:
| Q |
18 |
aaagtttactttagtggttagattaatttgagaacacaattttattatacactact |
73 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||| |||| |||||||||| |
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|
| T |
9484989 |
aaagtgtaatttagtggttagattaatttcagaacacaatcttatcatacactact |
9484934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 9484387 - 9484434
Alignment:
| Q |
93 |
caccttccaccactcttctctctccttcctccccagcaccagcaacatc |
141 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
9484387 |
caccttcaaccacccttctctctccttcctccccacca-cagcaacatc |
9484434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 10382675 - 10382628
Alignment:
| Q |
93 |
caccttccaccactcttctctctccttcctccccagcaccagcaacatc |
141 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
10382675 |
caccttcaaccacccttctctctccttcctccccacca-cagcaacatc |
10382628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 52720641 - 52721078
Alignment:
| Q |
18 |
aaagtttactttagtggttagattaatttgagaacacaattttattatacactactaatactagannnnnnnnna--caccttccaccactcttctctct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| | |||||||| |||||||||||||| |
|
|
| T |
52720641 |
aaagtttactttagtggttagattaatttgagaacacaatcttatcatacactactaacactagatttgtttttatacaccttcccccactcttctctct |
52720740 |
T |
|
| Q |
116 |
ccttcctccccagcaccagcaacatctaactcaccaccggatgttttcttctattccgagcaacaaaaaggtttgggtcctgctgtgtttctaaccaact |
215 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
52720741 |
ccttcctccccaccaccagtaacatctaactcaccaccggatgttttcttctattccgagcaacaaaaaggtttgtgtcctactgtgtttctaaccaact |
52720840 |
T |
|
| Q |
216 |
tagaagcaaattggt--------------------aatgctcttgtgaaaattagctataatgagtatcaaatagcaacaaaaatagaatctctattctc |
295 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52720841 |
tagaagcaaattggtaatggttgtgttagctagcaaatgctcatgtgaaaattaactataatgagtatcaaatagcaacaaaaatagaa-------tctc |
52720933 |
T |
|
| Q |
296 |
tagtactgtatttcaactagtgttcacttctaatactcaatctatataccaacccttcaacccttttatatacactgattagtcacatctcttctataaa |
395 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
52720934 |
tagtactgtatttcaacaagtgttcacttctaatactcaatctatacaccaacccttcaaaccttttatatacagtgattagtcatatctctcctataaa |
52721033 |
T |
|
| Q |
396 |
acaccaacacagtacacaaaagcacacattggacacgagtgagac |
440 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
52721034 |
acaccaacacagtacacagaagcacacattggacacgagtgagac |
52721078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 51288006 - 51288059
Alignment:
| Q |
92 |
acaccttccaccactcttctctctccttcctccccagcaccagcaacatctaac |
145 |
Q |
| |
|
|||||||||||||| |||||||||||||| || | | ||||||||||||||||| |
|
|
| T |
51288006 |
acaccttccaccacccttctctctccttcttctctaccaccagcaacatctaac |
51288059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 52721234 - 52721187
Alignment:
| Q |
93 |
caccttccaccactcttctctctccttcctccccagcaccagcaacatc |
141 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
52721234 |
caccttcaaccacccttctctctccttcctccccacca-cagcaacatc |
52721187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 41639124 - 41639016
Alignment:
| Q |
35 |
ttagattaatttgagaacacaattttattatacactactaatactagannnnnnnnn--acaccttccaccactcttctctctccttcctccccagcacc |
132 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| |||| |||||| |||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
41639124 |
ttagattaatttgagaacacaatcttatggtacacttctaacactagattatttcttttacaccttccaccacccttctctctccttcctccccaccacc |
41639025 |
T |
|
| Q |
133 |
agcaacatc |
141 |
Q |
| |
|
| ||||||| |
|
|
| T |
41639024 |
atcaacatc |
41639016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 46993440 - 46993481
Alignment:
| Q |
92 |
acaccttccaccactcttctctctccttcctccccagcacca |
133 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
46993440 |
acaccttccaccacccttttctctccttcctccccaccacca |
46993481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 3136043 - 3136092
Alignment:
| Q |
92 |
acaccttccaccactcttctctctccttcctccccagcaccagcaacatc |
141 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
3136043 |
acaccttccaccacccttctctctccttcctccccaccaccaccaacatc |
3136092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 25074963 - 25074914
Alignment:
| Q |
92 |
acaccttccaccactcttctctctccttcctccccagcaccagcaacatc |
141 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
25074963 |
acaccttccaccaccattctctcttcttcctccccaccaccagcaacatc |
25074914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 25132932 - 25132883
Alignment:
| Q |
92 |
acaccttccaccactcttctctctccttcctccccagcaccagcaacatc |
141 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
25132932 |
acaccttccaccaccattctctcttcttcctccccaccaccagcaacatc |
25132883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 3136526 - 3136490
Alignment:
| Q |
34 |
gttagattaatttgagaacacaattttattatacact |
70 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3136526 |
gttagattaatttgagaacacaattttatcatacact |
3136490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 3136466 - 3136425
Alignment:
| Q |
92 |
acaccttccaccactcttctctctccttcctccccagcacca |
133 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
3136466 |
acaccttccaccacctttctctctccttcctccccaccacca |
3136425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 25074403 - 25074452
Alignment:
| Q |
92 |
acaccttccaccactcttctctctccttcctccccagcaccagcaacatc |
141 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| || |||||||||| |
|
|
| T |
25074403 |
acaccttccaccaccattctctctccttcctctccaccatcagcaacatc |
25074452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 25132372 - 25132421
Alignment:
| Q |
92 |
acaccttccaccactcttctctctccttcctccccagcaccagcaacatc |
141 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| || |||||||||| |
|
|
| T |
25132372 |
acaccttccaccaccattctctctccttcctctccaccatcagcaacatc |
25132421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 2038716 - 2038765
Alignment:
| Q |
92 |
acaccttccaccactcttctctctccttcctccccagcaccagcaacatc |
141 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
2038716 |
acaccttccaccaccattctctcttcttcctccccaccaccagcaacatc |
2038765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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