View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_24 (Length: 431)
Name: NF18417_high_24
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 29225630 - 29225234
Alignment:
| Q |
16 |
catcattgggtggaaatgacttaccaatcaaagtcatgtctattgctgttgagaccttgatttggccttgtaaatttgctgatgaaattgcattttgaat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29225630 |
catcattgggtggaaatgacttaccaatcaaagtcatgtctattgctgttgagaccttgatttggccttgtaaatttgcagatgaaattgcattttgaat |
29225531 |
T |
|
| Q |
116 |
gttttgcatggcagggagaatgtattgggcctcattgtcattaggtttaatttcatttccaacactgatgtacttgatttttacattttgagcatagggt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29225530 |
gttttgcatggcagggagaatgtattgggcctcattgtcattaggtttaatttcatttccaacactgatgtacttgatttttacattttgagcatagggt |
29225431 |
T |
|
| Q |
216 |
ctcacatatttgttgacccaatttgtggcttcatttgcatttctaagagaaggaagagtttccttagctacatcaaggatcaattctatgttggaacctc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29225430 |
ctcacatatttgttgacccaatttgtggcttcatttgcatttctaagagaaggaagggtttccttagccacatcaaggatcaattctatgttggaacctc |
29225331 |
T |
|
| Q |
316 |
taagggcttggagggctggttcgtctgggaagaatatacgcatttggttaatgcctcttgatttatataaattcacaacatcttgccttgatggtag |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29225330 |
taagggcttggagggctggttcgtctgggaagaatatacgcatttggttaatgcctcttgatttatataaattcacaacatcttgccttgatggtag |
29225234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 29240806 - 29240410
Alignment:
| Q |
16 |
catcattgggtggaaatgacttaccaatcaaagtcatgtctattgctgttgagaccttgatttggccttgtaaatttgctgatgaaattgcattttgaat |
115 |
Q |
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|||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240806 |
catcattgggtggatatgaagtaccaatcaaagtcatgtcaattgctgttgagaccttgatttggccttgtaaatttgctgatgaaattgcattttgaat |
29240707 |
T |
|
| Q |
116 |
gttttgcatggcagggagaatgtattgggcctcattgtcattaggtttaatttcatttccaacactgatgtacttgatttttacattttgagcatagggt |
215 |
Q |
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|||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| |
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| T |
29240706 |
gttttgcatggcagtggcaatgtattgggcttcattgtcattaggtttaatttcatttccaacagtgatgtacttgatttttacatcttgagcatatggt |
29240607 |
T |
|
| Q |
216 |
ctcacatatttgttgacccaatttgtggcttcatttgcatttctaagagaaggaagagtttccttagctacatcaaggatcaattctatgttggaacctc |
315 |
Q |
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| T |
29240606 |
gtcacatatttttggacccaatttgtagcttcattgccatctgtaagagaagatagggtttccttggccacatcaaggatcaattctatgttggaacctt |
29240507 |
T |
|
| Q |
316 |
taagggcttggagggctggttcgtctgggaagaatatacgcatttggttaatgcctcttgatttatataaattcacaacatcttgccttgatggtag |
412 |
Q |
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|||||||||| |||||| |||||||||||||| |||||||||||| || |||||| |||| |||||||| | |||||| ||||| ||||||||||| |
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| T |
29240506 |
taagggcttgaagggcttgttcgtctgggaagtatatacgcattttgtcaatgccatttgacttatataagtccacaacttcttgacttgatggtag |
29240410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 412
Target Start/End: Complemental strand, 29230290 - 29229898
Alignment:
| Q |
20 |
attgggtggaaatgacttaccaatcaaagtcatgtctattgctgttgagaccttgatttggccttgtaaatttgctgatgaaattgcattttgaatgttt |
119 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||| || |||||||| |||| |||||| ||||||||||||||| |
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| T |
29230290 |
attgggtggatatgaattaccaatcaaagtcatgtcaattgctattgagaccttgatttgtccctgtaaattggctgctgaaatagcattttgaatgttt |
29230191 |
T |
|
| Q |
120 |
tgcatggcagggagaatgtattgggcctcattgtcattaggtttaatttcatttccaacactgatgtacttgatttttacattttgagcatagggtctca |
219 |
Q |
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|||||||||||||||||| |||| || ||| |||| | |||||||||||||||||| ||| |||||||||||||||| |||| | ||||||||||| ||| |
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| T |
29230190 |
tgcatggcagggagaatggattgtgcttcactgtcgtaaggtttaatttcatttccgacagtgatgtacttgattttaacatctcgagcatagggtttca |
29230091 |
T |
|
| Q |
220 |
catatttgttgacccaatttgtggcttcatttgcatttctaagagaaggaagagtttccttagctacatcaaggatcaattctatgttggaacctctaag |
319 |
Q |
| |
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||||| | ||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||| |||||||||||||| |||||||||||||||||||| |
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| T |
29230090 |
catatctattgacccaatttgtggcttcattggcatttctaagagaattaagggtttccctagccacatcaaggatcaactctatgttggaacctctaag |
29229991 |
T |
|
| Q |
320 |
ggcttggagggctggttcgtctgggaagaatatacgcatttggttaatgcctcttgatttatataaattcacaacatcttgccttgatggtag |
412 |
Q |
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||||||||||||| |||| ||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
29229990 |
ggcttggagggcttgttcatctgggaagtaaagacgcatttggttaatgcctcttgatctatataaattcacaacatcttgcctagatggtag |
29229898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 29251077 - 29250684
Alignment:
| Q |
19 |
cattgggtggaaatgacttaccaatcaaagtcatgtctattgctgttgagaccttgatttggccttgtaaatttgctgatgaaattgcattttgaatgtt |
118 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29251077 |
cattgggtggatatgaattaccaatcaaagtcatgtcaattgctgttgagaccttgatttggccttgtaaatttgcagatgaaattgcattttgaatgtt |
29250978 |
T |
|
| Q |
119 |
ttgcatggcagggagaatgtattgggcctcattgtcattaggtttaatttcatttccaacactgatgtacttgatttttacattttgagcatagggtctc |
218 |
Q |
| |
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|||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| || |
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| T |
29250977 |
ctgcatggcagtggcaatgtattgggcttcattgtcattaggtttaatttcatttccaacagtgatgtacttgatttttacatcttgagcatagggtgtc |
29250878 |
T |
|
| Q |
219 |
acatatttgttgacccaatttgtggcttcatttgcatttctaagagaaggaagagtttccttagctacatcaaggatcaattctatgttggaacctctaa |
318 |
Q |
| |
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| T |
29250877 |
acatacttttggacccaatttgtagcttcaccggcatctgtaagagaggaaagggtttccttggtcacaccaaggatcaattcaatgttagaacctctaa |
29250778 |
T |
|
| Q |
319 |
gggcttggagggctggttcgtctgggaagaatatacgcatttggttaatgcctcttgatttatataaattcacaacatcttgccttgatggtag |
412 |
Q |
| |
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||||||| ||| || || |||||| || |||||||||||| | ||||||| ||||||||||||||| ||||| |||||| |||||||||| |
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|
| T |
29250777 |
gggcttgtaggacttcttgatctgggtagtatatacgcattttgccaatgccttttgatttatataaatctacaacttcttgctttgatggtag |
29250684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 29218250 - 29218190
Alignment:
| Q |
75 |
atttggccttgtaaatttgctgatgaaattgcattttgaatgttttgcatggcagggagaa |
135 |
Q |
| |
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||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||| |||| |
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| T |
29218250 |
atttggccttgtaaatttgctgaagatattgctttttgaatgttttgcattgcaggaagaa |
29218190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 412
Target Start/End: Complemental strand, 29234736 - 29234667
Alignment:
| Q |
343 |
ggaagaatatacgcatttggttaatgcctcttgatttatataaattcacaacatcttgccttgatggtag |
412 |
Q |
| |
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||||| |||||||||||| || |||||| |||| |||||||||| |||||| ||||||||||||||||| |
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| T |
29234736 |
ggaagtatatacgcatttagtcaatgccatttgacttatataaatccacaacttcttgccttgatggtag |
29234667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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