View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18417_high_28 (Length: 394)
Name: NF18417_high_28
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 11019583 - 11019234
Alignment:
| Q |
1 |
attttagcttctaataaaccaaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11019583 |
attttagcttctaataaaccaaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactc |
11019484 |
T |
|
| Q |
101 |
cttcagagaatctttctggtttgaaatctccagcatcatctccccaaaattccttctcttggtgcatcattgatacaggtactatgagttctactcctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11019483 |
cttcagagaatctttctggtttgaaatctccagcatcatctccccaaaattccttctcttggtgcatcattgatacaggtactatgagttctactcctgc |
11019384 |
T |
|
| Q |
201 |
aggaagtgttaggtctccgagttttgtgtctttgcgaagaaatcgagatagcataataactggtggatataaccttagactttcttgtagaatcattgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11019383 |
aggaagtgttaggtctccgagttttgtgtctttgcgaagaaatcgagatagcataataactggtgggtataaccttagactttcttgtagaatcattgat |
11019284 |
T |
|
| Q |
301 |
acctgtttcatatcgaatgataattagtgtaccaaaatcaagaataatta |
350 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11019283 |
acctgtttcatatagaatgataattagtgtaccaaaatcaagaataatta |
11019234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 15858512 - 15858630
Alignment:
| Q |
7 |
gcttctaataaaccaaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactccttcag |
106 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||| || |||||||||| || ||||||||||| | || |||||||| |
|
|
| T |
15858512 |
gcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcag |
15858611 |
T |
|
| Q |
107 |
agaatctttctggtttgaa |
125 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
15858612 |
caaacctttcaggtttgaa |
15858630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 15865580 - 15865698
Alignment:
| Q |
7 |
gcttctaataaaccaaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactccttcag |
106 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||| ||| ||||||||||||||||| || ||||||||||| || ||||| ||||||| || |||||||| |
|
|
| T |
15865580 |
gcttctagtaaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttttccttttgtagcctttgcaattccttcag |
15865679 |
T |
|
| Q |
107 |
agaatctttctggtttgaa |
125 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
15865680 |
caaacctttcaggtttgaa |
15865698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 15851612 - 15851712
Alignment:
| Q |
7 |
gcttctaataaaccaaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactccttcag |
106 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||| | || ||||||| ||| ||||| ||||||| || |||||||| |
|
|
| T |
15851612 |
gcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgtggcctttgcaattccttcag |
15851711 |
T |
|
| Q |
107 |
a |
107 |
Q |
| |
|
| |
|
|
| T |
15851712 |
a |
15851712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 15844377 - 15844495
Alignment:
| Q |
7 |
gcttctaataaaccaaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactccttcag |
106 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||| |||||||||||||| || || |||||||||| || ||||||||||| | || |||||||| |
|
|
| T |
15844377 |
gcttctaataaggtaaagttttgtccaagacaaattctaggaccccatccaaaggggaaataagaaacttgtccttttgttgccttcgcaattccttcag |
15844476 |
T |
|
| Q |
107 |
agaatctttctggtttgaa |
125 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
15844477 |
caaacctttcgggtttgaa |
15844495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 30395878 - 30395797
Alignment:
| Q |
21 |
aaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactcct |
102 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| || || | |||||| | ||||||||||| || |||| |||| |
|
|
| T |
30395878 |
aaagttttgtccaatgcaaattcttggaccccatccaaatggaaaaaatgaaactctaccatttgttgctttagaaattcct |
30395797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 30385126 - 30385022
Alignment:
| Q |
21 |
aaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactccttcagagaatctttctggt |
120 |
Q |
| |
|
||||||||||||||| |||| || |||||||||||||| || || | |||||| | ||||||||||| || |||| |||| || | |||||||| || |
|
|
| T |
30385126 |
aaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccaaaaaatctttcagga |
30385027 |
T |
|
| Q |
121 |
ttgaa |
125 |
Q |
| |
|
||||| |
|
|
| T |
30385026 |
ttgaa |
30385022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University