View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_3 (Length: 642)
Name: NF18417_high_3
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 31538129 - 31537845
Alignment:
| Q |
1 |
ttgatctttatcattgaaactctcaactcattgtttgcttgggttgtaatgtttttaggagttgttatatattttggttcgtgtattcttaggagtcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
31538129 |
ttgatctttatcattgaaactctcaactcattgtttgcttgggttgtaatgtttttaggagttgttatat--tttggttcgtgtatttttaggagtcatt |
31538032 |
T |
|
| Q |
101 |
gacttgaattatcttgtaattctctttcatgatacatcttatgctaagattgtttgtgtatactccattaaaaactataaacaaaattgatcaaataaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31538031 |
gacttgaattatcttgtaattctctttcatgatacatcttatgctaagattgtttgtgtatactccattaaaaactataaacaaaattgatcaaataaaa |
31537932 |
T |
|
| Q |
201 |
ttgatatattttgtgctaaatttaaatcaaatacatcaattttatttgattcatttttgcttatgaattggaatggaagcagtgtat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
31537931 |
ttgatatattttgtgctaaatttaaatcaaatacatcaattttatttgatttatttttgcttatgaattggaatggaaggagtgtat |
31537845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 292 - 642
Target Start/End: Complemental strand, 31537807 - 31537457
Alignment:
| Q |
292 |
ataagcgatcacgttagtgtcttacttctaattctaatctacaaactaatttattgtctttcaaatnnnnnnnnnnnttgactttgaatatttttattat |
391 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
31537807 |
ataagcgattacgttagtgtcttacttctaattctaatctacaaactaattcattgtctttcaaataaaaaaaaaa-ttgactttgaatatttttattat |
31537709 |
T |
|
| Q |
392 |
atttgaaattcatcaatattcaataacttatggcattatttaattaccttgttgcaactgttttttagtgaagaacacttcaaaacagaaagatgtctaa |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31537708 |
atttgaaattcatcaatattcaataacttatggcattatttaattaccttgttgcaactgttttttagtgaagaacacttcaaaacagaaagatgtctaa |
31537609 |
T |
|
| Q |
492 |
ccatgttttaaagttgcttagacgtttccatcagtgtttctgaca-nnnnnnnaaaataattaattgttaatttctaacattacaagttgtattagtgca |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
31537608 |
ccatgttttaaagttgcttagacgtttccatcaatgtttttcacattttatttaaaataattagttgtcaatttctaacattacaagttgtattagtgca |
31537509 |
T |
|
| Q |
591 |
tataattgtaaggtaagttcacttagatatacaaatggacaagttgcatggc |
642 |
Q |
| |
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||||||| ||||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
31537508 |
tataatttgaaggtaacttcaattagatatacaaatggacaagttgcatggc |
31537457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 601 - 642
Target Start/End: Complemental strand, 31532216 - 31532175
Alignment:
| Q |
601 |
aggtaagttcacttagatatacaaatggacaagttgcatggc |
642 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
31532216 |
aggtaacttcacttaaatatacaaatggacaagttgcatggc |
31532175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 52861707 - 52861760
Alignment:
| Q |
197 |
aaaattgatatattttgtgctaaatttaaatcaaatacatcaattttatttgat |
250 |
Q |
| |
|
|||||| |||||||| || | |||||| |||||||||||||||||||||||||| |
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|
| T |
52861707 |
aaaattaatatatttagtccaaaatttgaatcaaatacatcaattttatttgat |
52861760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 45044292 - 45044336
Alignment:
| Q |
220 |
atttaaatcaaatacatcaattttatttgattcatttttgcttat |
264 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| |||| |
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|
| T |
45044292 |
atttaaatcaaatacattaattttctttgattcatttttgtttat |
45044336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 10679781 - 10679714
Alignment:
| Q |
191 |
tcaaataaaattgatatattttgtgctaaatttaaatcaaatacatcaattttatttgattcattttt |
258 |
Q |
| |
|
||||| ||||||||| ||||| | |||| |||| |||||||||||||||||||||||| || ||||| |
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| T |
10679781 |
tcaaagaaaattgatgtatttagacctaattttatatcaaatacatcaattttatttgactcgttttt |
10679714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 39858252 - 39858295
Alignment:
| Q |
112 |
tcttgtaattctctttcatgatacatcttatgctaagattgttt |
155 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| |||||||| |
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|
| T |
39858252 |
tcttgtaattatctttcatgatacatcttgtgctatgattgttt |
39858295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 12272096 - 12272139
Alignment:
| Q |
221 |
tttaaatcaaatacatcaattttatttgattcatttttgcttat |
264 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| |||||||||| |
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| T |
12272096 |
tttaaatcaaatacatctattttatttgactcagttttgcttat |
12272139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 8637255 - 8637328
Alignment:
| Q |
191 |
tcaaataaaattgatatattttgtgctaaatttaaatcaaatacatcaattttatttgattcatttttgcttat |
264 |
Q |
| |
|
||||| ||||||||||||||| || | |||||| |||||||||||||||| ||||| ||| |||||||||| |
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|
| T |
8637255 |
tcaaaaaaaattgatatatttggttcaaaatttggtccaaatacatcaattttctttgactcaattttgcttat |
8637328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 32729773 - 32729737
Alignment:
| Q |
227 |
tcaaatacatcaattttatttgattcatttttgctta |
263 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
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|
| T |
32729773 |
tcaaatacatcaatttttgttgattcatttttgctta |
32729737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 51713761 - 51713809
Alignment:
| Q |
216 |
ctaaatttaaatcaaatacatcaattttatttgattcatttttgcttat |
264 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||| | |||||||||||||| |
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| T |
51713761 |
ctaaatttgattcaaatacatcaattttctttaactcatttttgcttat |
51713809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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