View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_31 (Length: 352)
Name: NF18417_high_31
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_31 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 352
Target Start/End: Complemental strand, 41080506 - 41080166
Alignment:
| Q |
12 |
tcatcatggtgctagggatgatgctcataactgttgtagtcaaaaagaagatgaacaaggtaaacttggtttttacctagctaaagatcttccaaaagca |
111 |
Q |
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| T |
41080506 |
tcatcatggtgctagggatgatgctcataactgttgtagtcaaaaagaagatgaacaaggtaaacttggtttttacctagctaaagatcttccaaaagca |
41080407 |
T |
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| Q |
112 |
gctacaagagcttttacagataatttaagggtgttatcacctaaaattttaccagctagggaattacttaggtatatgttaatgtcactcatnnnnnnng |
211 |
Q |
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| T |
41080406 |
gctacaagagcttttacagataatttaagggtgttatcacctaaaattttaccagctagggaattacttaggtatatgttaatgtcactcataaaaaaag |
41080307 |
T |
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| Q |
212 |
tgataaaatattttgctcccaagtcagctgcaagatggtttggaacaagtaacaaatcaccagtgaatttcaaaactggtgttgatcattttgtgctcca |
311 |
Q |
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| T |
41080306 |
tgataaaatattttgctcctaagtcagcagcaagatggtttggaacaagtagcaaatcaccagtgaatttcaaaactggtgttgatcattttgtgctcca |
41080207 |
T |
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| Q |
312 |
cactggaggaaaagcagtgatagatggaattgggatgagtt |
352 |
Q |
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| T |
41080206 |
cactggaggaaaagcagtgatagatggaattgggatgagtt |
41080166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 23111181 - 23111268
Alignment:
| Q |
265 |
aaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgatagatggaattgggatgagtt |
352 |
Q |
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| T |
23111181 |
aaatcaccattgaatttcaaaactggagttgatcatttttgcctccacactggaggaaaagcagtgattgatggaattggaatgagtt |
23111268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 23073156 - 23073069
Alignment:
| Q |
265 |
aaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgatagatggaattgggatgagtt |
352 |
Q |
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| T |
23073156 |
aaatcaccattgaatttcaaaactggagttgatcatttttgcctccacacaggaggaaaagcagtgattgatggaattggaatgagtt |
23073069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 23077761 - 23077682
Alignment:
| Q |
265 |
aaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgatagatggaattgg |
344 |
Q |
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| T |
23077761 |
aaatcaccattgaattttaaaactggtgttgatcatttttgcctccatacaggaggaaaagcagtgattgatggagttgg |
23077682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 23111036 - 23111121
Alignment:
| Q |
99 |
tcttccaaaagcagctacaagagcttttacagataatttaagggtgttatcacctaaaattttaccagctagggaattacttaggt |
184 |
Q |
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| T |
23111036 |
tcttccaaaagcagcaacaagagcttttgttgataatttaagggtaatttcacccaaaattttgccaacaaaggaaatacttaggt |
23111121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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