View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18417_high_36 (Length: 319)

Name: NF18417_high_36
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18417_high_36
NF18417_high_36
[»] chr2 (1 HSPs)
chr2 (18-308)||(15303348-15303641)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 15303348 - 15303641
Alignment:
Q  18 gtttttgcattgttt-gtttggtcttttaaagcattattttgcattcttacgtgacttttagtggtcttagtaaagtcatgtaatgtctaaga---acat 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||    
T  15303348 gtttttgcattgttttgtttggtcttttaaagcattattttgcattcttacgtgacttttagtggtcttagtaaagtcatgtaatgtttaagaagaacat 15303447  T
Q  114 tgacaatattttggtccaatggcacaataatgggaaatgcaagaatattgcaattcaggttggaatattctacacatctccacttctatggttctttagc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15303448 tgacaatattttggtccaatggcacaataatgggaaatgcaagaatattgcaattcaggttggaatattctacacatctccacttctatggttctttagc 15303547  T
Q  214 taatgaaccaaccttgtccatcaaaatttccttccaaacatcttcacattattgtacttggatttggatggacatttagtcaacaaattgttcat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||    
T  15303548 taatgaaccaaccttgtccatcaaaatttccttccaaacatcttcacattattgtacttgga-ttggattgacatttattcaagaaattgttcat 15303641  T

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