View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_4 (Length: 637)
Name: NF18417_high_4
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 20 - 619
Target Start/End: Original strand, 13881048 - 13881636
Alignment:
| Q |
20 |
aagctcaaatggtggcctctgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcat |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881048 |
aagctcaaatggtggcctctgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcat |
13881147 |
T |
|
| Q |
120 |
ggaaagtaagaagatgttgaatgtaagaagggaaaatgtaaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaacgcaatactatc |
219 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881148 |
ggaaagtaagaaaatgttgaatgtaagaagggaaaacgtaaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaacgcaatactatc |
13881247 |
T |
|
| Q |
220 |
ataaatttagtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgacta |
319 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881248 |
ataaatttagtaacacaagctggttttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgacta |
13881347 |
T |
|
| Q |
320 |
ttccacccataggttaacatgtttgttcagtaacacaagttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacat |
419 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881348 |
ttccaccaataggttaacatgtttgttcagtaacacaagttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacat |
13881447 |
T |
|
| Q |
420 |
ataacactacttaaaactccaggagcatatttaaataggcaagagtcaaacttcaaatgnnnnnnnnnnnnnnnnncttgcatattcaagcatattcaat |
519 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
13881448 |
ataacactacttaaaactccaggagcatatttaaataggcaagagtcaaacttcaaatgaaaaaaggaaaagaaaacttgcatat----------tcaat |
13881537 |
T |
|
| Q |
520 |
acgatatatgttctaatcgtgtagaacacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcatatgcatatagttga |
619 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13881538 |
acgatatatgttctaatcgtgtagaacacaagcattttcgtggtaaactatatcgacaaacttttcaagttttattga-ttttcatatgcatatagttga |
13881636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 23 - 325
Target Start/End: Original strand, 13254444 - 13254759
Alignment:
| Q |
23 |
ctcaaatggtggcctctgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatgga |
122 |
Q |
| |
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||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |
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| T |
13254444 |
ctcaaatggtggcctatgtatcacctccttcattgttaaggggcatgagtctgttatccagaagtatgtgaatgcagtttctggattctccgtgcatgga |
13254543 |
T |
|
| Q |
123 |
aagtaagaagatgttgaatgtaagaagggaaaatgtaaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaacgcaatactatc-at |
221 |
Q |
| |
|
|||| ||| || ||||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||| |||||||||||| ||||| ||||| || |
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|
| T |
13254544 |
aagtcggaaaatattgaatgtaagaagggagagcgtaaaacgtaagctatccgattaatatcgattagagttaaaagtgattaaaagcaatgctatctat |
13254643 |
T |
|
| Q |
222 |
------------aaatttagtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatc |
309 |
Q |
| |
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| ||| |||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||| | | |
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| T |
13254644 |
attttgcaggtaagattcagtaacacaagcatgttttatcgtaaaatgagaccatctgcttccaatatctgaactttctgcaatccaatgatagtcgacc |
13254743 |
T |
|
| Q |
310 |
taaacgactattccac |
325 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
13254744 |
taaatgactattccac |
13254759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 14367387 - 14367230
Alignment:
| Q |
23 |
ctcaaatggtggcctctgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatgga |
122 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||| |
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|
| T |
14367387 |
ctcaaatggtggcttatgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgagaacgcagtctctggattccctgtgcatgga |
14367288 |
T |
|
| Q |
123 |
aagtaagaagatgttgaatgtaagaagggaaaatgtaaaacgtaagctatccgattaa |
180 |
Q |
| |
|
|||| |||| | ||||||||||||||||| | ||||| ||||||||||||||||| |
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|
| T |
14367287 |
aagtcagaaattattgaatgtaagaagggatagcgtaaactgtaagctatccgattaa |
14367230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 619
Target Start/End: Original strand, 16022434 - 16022546
Alignment:
| Q |
510 |
catattcaatacgatatatgttctaatcgtgtagaa---cacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcata |
606 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||| ||| ||||||| ||| ||||||||||||||||||||| || ||||| ||||||| ||||| |
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|
| T |
16022434 |
catattcaatacgatatatgttctcatcatgaagaagaacacgagcattttcgtgataaactatatcgacaaactttccaggttttcttgatttctcata |
16022533 |
T |
|
| Q |
607 |
tgcatatagttga |
619 |
Q |
| |
|
||||||||||||| |
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|
| T |
16022534 |
tgcatatagttga |
16022546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 509 - 619
Target Start/End: Complemental strand, 14389688 - 14389578
Alignment:
| Q |
509 |
gcatattcaatacgatatatgttctaatcgtgtagaacacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcatatg |
608 |
Q |
| |
|
||||||||||||| |||||||||| ||| || ||||||| || |||| ||| ||||||||||| ||||||||| |||| ||| ||||||| ||| ||| |
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|
| T |
14389688 |
gcatattcaatacagtatatgttctcatcatgaagaacacgagaattttcgtgataaactatatcaacaaactttccaagctttcttgatttgtcaaatg |
14389589 |
T |
|
| Q |
609 |
catatagttga |
619 |
Q |
| |
|
||||||||||| |
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|
| T |
14389588 |
catatagttga |
14389578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 428
Target Start/End: Original strand, 16022307 - 16022378
Alignment:
| Q |
357 |
agttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacacta |
428 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
16022307 |
agttgaatagacagtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacatataacacta |
16022378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 359 - 437
Target Start/End: Complemental strand, 14389836 - 14389758
Alignment:
| Q |
359 |
ttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacactacttaaaact |
437 |
Q |
| |
|
||||||||| || ||||||||||| || ||||| | ||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
14389836 |
ttgaatagaaagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacatataacactccttaaaact |
14389758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 341
Target Start/End: Complemental strand, 14367184 - 14367070
Alignment:
| Q |
228 |
agtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatcc-aatgatagtcaatctaaacgactattccacc |
326 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||||||||||| ||||||||| ||||| ||| || || ||| || |||||||||| ||||||||| |
|
|
| T |
14367184 |
agtaacacaagctggttttatattagaatgagaccatctgctcccaatatctgaacttgctgtaaaccaaatagtaatcaatctaaattcctattccact |
14367085 |
T |
|
| Q |
327 |
cataggttaacatgt |
341 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
14367084 |
cacaggttaacatgt |
14367070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 13878561 - 13878638
Alignment:
| Q |
263 |
atctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccacccataggttaacatg |
340 |
Q |
| |
|
||||||| ||||||||||||||| |||||| ||||||||| |||||||| | |||||| || || ||||||||||| |
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|
| T |
13878561 |
atctgctcccaatatcttaacttgctgcaaaccaatgataatcaatctatatacctattcaactcacaggttaacatg |
13878638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 13856744 - 13856788
Alignment:
| Q |
396 |
gaaataaaccatgttacaaaacatataacactacttaaaactcca |
440 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
13856744 |
gaaataaaccatgttaccaaacatataacactccttaaaattcca |
13856788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 13139649 - 13139698
Alignment:
| Q |
158 |
taaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaa |
207 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
13139649 |
taaaccgtaagttatctgattaatattgattaaagtgaaaagtgattaaa |
13139698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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