View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_41 (Length: 288)
Name: NF18417_high_41
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 11612051 - 11611780
Alignment:
| Q |
16 |
atgaactcgatcacaaagagtgttgaagatgaagcaaagtattcttctttccctgcatcataccattttggaacgttgatgattccaatgttggtgaaga |
115 |
Q |
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| T |
11612051 |
atgaactcgatcacaaagagtgttgaagatgaagcaaagtattcttctttccctgcatcataccattttggaacgttgatgattccaatgttggtgaaga |
11611952 |
T |
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| Q |
116 |
cttcagggagtaacatccctgcaacacctaccatagcccaacgtccattcacaagctcggcttgaacaaaccatttcaagttctctggatcttctgcaag |
215 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |
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| T |
11611951 |
cttcagggagtaacatccctgcaacacctaacatagcccaacgtccattcacaagctcggcttgaacaaaccatttcaagttctctggatcctcggctag |
11611852 |
T |
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| Q |
216 |
tcccaatggatcgaatccgttgtctccaggaagactaatagcaacacaaaacaaacatatcaacaagttagtc |
288 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
11611851 |
tcccaatggatcgaatccgttgtctccgggaagactaat-gcaacacaaaacaaacatattaacaagttagtc |
11611780 |
T |
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