View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18417_high_45 (Length: 274)

Name: NF18417_high_45
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18417_high_45
NF18417_high_45
[»] chr3 (16 HSPs)
chr3 (1-274)||(31137913-31138192)
chr3 (1-98)||(29127929-29128026)
chr3 (15-98)||(25294984-25295067)
chr3 (15-98)||(29762155-29762238)
chr3 (15-89)||(34374451-34374525)
chr3 (31-89)||(50405612-50405670)
chr3 (15-99)||(45877478-45877562)
chr3 (15-98)||(3136694-3136777)
chr3 (15-98)||(26043836-26043919)
chr3 (15-98)||(35315980-35316063)
chr3 (31-98)||(47219184-47219251)
chr3 (31-98)||(49021203-49021270)
chr3 (15-98)||(51060281-51060364)
chr3 (12-86)||(24146340-24146414)
chr3 (15-89)||(26361976-26362050)
chr3 (34-98)||(7310703-7310767)
[»] chr2 (12 HSPs)
chr2 (15-89)||(2784956-2785030)
chr2 (15-67)||(30721885-30721937)
chr2 (15-87)||(34356230-34356302)
chr2 (15-98)||(3811690-3811773)
chr2 (15-99)||(12864248-12864332)
chr2 (34-98)||(16034980-16035044)
chr2 (15-89)||(20612542-20612617)
chr2 (15-102)||(44773287-44773374)
chr2 (15-89)||(6358159-6358233)
chr2 (15-65)||(18649058-18649108)
chr2 (15-87)||(10026626-10026698)
chr2 (22-86)||(19976818-19976882)
[»] chr6 (5 HSPs)
chr6 (15-87)||(5029845-5029917)
chr6 (15-89)||(10396501-10396575)
chr6 (15-98)||(5253222-5253305)
chr6 (15-98)||(30788852-30788935)
chr6 (34-98)||(14783419-14783483)
[»] chr5 (9 HSPs)
chr5 (31-99)||(2485237-2485305)
chr5 (15-88)||(21375376-21375449)
chr5 (31-87)||(20255410-20255466)
chr5 (34-98)||(27648424-27648488)
chr5 (15-98)||(1538456-1538539)
chr5 (23-98)||(14728116-14728191)
chr5 (15-89)||(11845809-11845883)
chr5 (15-89)||(39099787-39099861)
chr5 (50-90)||(38296737-38296777)
[»] chr8 (5 HSPs)
chr8 (31-98)||(39969914-39969981)
chr8 (31-98)||(43027349-43027416)
chr8 (15-98)||(45521196-45521279)
chr8 (31-77)||(583856-583902)
chr8 (54-98)||(8803121-8803165)
[»] chr4 (14 HSPs)
chr4 (22-89)||(54946285-54946352)
chr4 (31-102)||(43458658-43458729)
chr4 (15-98)||(55921063-55921146)
chr4 (31-88)||(20354682-20354739)
chr4 (15-88)||(20421802-20421875)
chr4 (34-102)||(37369037-37369105)
chr4 (31-98)||(6779256-6779323)
chr4 (31-98)||(7246645-7246712)
chr4 (15-98)||(29895816-29895899)
chr4 (35-89)||(37194859-37194913)
chr4 (23-89)||(40780869-40780935)
chr4 (15-100)||(14124045-14124130)
chr4 (33-90)||(26479956-26480013)
chr4 (28-88)||(55005317-55005375)
[»] chr1 (7 HSPs)
chr1 (15-98)||(26325837-26325920)
chr1 (15-98)||(32150922-32151005)
chr1 (15-98)||(41663856-41663939)
chr1 (15-98)||(10422813-10422896)
chr1 (15-98)||(32142846-32142929)
chr1 (15-63)||(28324615-28324663)
chr1 (34-98)||(34697379-34697443)
[»] scaffold0029 (1 HSPs)
scaffold0029 (15-89)||(41071-41145)
[»] chr7 (10 HSPs)
chr7 (15-98)||(48804710-48804793)
chr7 (15-102)||(3353451-3353538)
chr7 (15-98)||(4195201-4195284)
chr7 (31-98)||(17748381-17748448)
chr7 (31-98)||(38578866-38578933)
chr7 (31-98)||(48551900-48551967)
chr7 (15-89)||(13095885-13095959)
chr7 (15-89)||(45960011-45960085)
chr7 (31-88)||(43346788-43346845)
chr7 (31-98)||(24983417-24983485)
[»] scaffold0009 (1 HSPs)
scaffold0009 (23-99)||(42830-42906)
[»] scaffold0291 (1 HSPs)
scaffold0291 (15-98)||(6882-6965)
[»] scaffold0209 (1 HSPs)
scaffold0209 (31-77)||(12616-12662)
[»] scaffold0116 (1 HSPs)
scaffold0116 (54-90)||(17456-17492)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 31138192 - 31137913
Alignment:
Q  1 cgatttccaaagataacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaagtc 100  Q
    |||||| |||||| || || |||| ||||||| ||||||||||||| || |||| ||||| ||| |||||||||||||||||||||||||  |||||| |    
T  31138192 cgattttcaaagagaataatatttagtcattgtgcatgcctctatgcataagtcagattaatcgtccatcattgatgagtcggaaaccgatacgaaagcc 31138093  T
Q  101 aannnnnnnnn------attagaatatctatgtgcaagaatctatagagaataaacttgttccatttagttttctcacagattaaaaaacgcttttattt 194  Q
    ||               |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31138092 aaagatttttttattttattagaatatctatgtgcaagaatctgtggagaataaacttgttccatttagttttctcagagattaaaaaacgcttttattt 31137993  T
Q  195 ttctgagaaactaaattagatcttgcaaattttcttgaagagtaaaatgaatcttcactccacaatttatactacaattt 274  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  31137992 ttctgagaaactaaattagatcttgcaaattttcttaaagagtaaaatgagtcttcactccacaatttatactacaattt 31137913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 29127929 - 29128026
Alignment:
Q  1 cgatttccaaagataacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    |||||||||  || ||||||| ||||||| |||||||||||||| | ||||| ||||||||||||||| | ||| || |||||||||||| |||||||    
T  29127929 cgatttccagggagaacaacacttggtcagtgcgcatgcctctacgcatgagccggattagtcgcccacctttggtgggtcggaaaccgatgcgaaag 29128026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 25294984 - 25295067
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||| || |||||||||||||||| ||||| ||||||||||| ||| ||||| || || ||||||||  |||||||    
T  25294984 aacaacacttggccagtgcgcatgcctctatgcatgagccggattagtcgtccaccattggtgggttggaaaccggtgcgaaag 25295067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 29762238 - 29762155
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||| || |||||||||||||||| |||||  |||||||||| ||| ||||| || |||||||||||  |||||||    
T  29762238 aacaacacttggccagtgcgcatgcctctatgcatgagctggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 29762155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 34374525 - 34374451
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    ||||||| ||||||| |||||||||||| | | || ||||||||||||||||| || ||| || |||||||||||    
T  34374525 aacaacacttggtcagtgcgcatgcctcaacgcataagtcggattagtcgcccttctttggtgggtcggaaaccg 34374451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 50405670 - 50405612
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    |||||||||||||| | | ||||||||||||||||||| ||||| || |||||||||||    
T  50405670 tgcgcatgcctctacgcacgagtcggattagtcgcccaccattggtgggtcggaaaccg 50405612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 45877478 - 45877562
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaagt 99  Q
    ||||||| |||| || ||| |||||||||| | ||||| |||||||||||  || |||||||| |||||||||||  ||||||||    
T  45877478 aacaacacttggccagtgcacatgcctctacgcatgagccggattagtcgttcaccattgatgggtcggaaaccggtgcgaaagt 45877562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 3136777 - 3136694
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||| || |||||||||||||| | ||||||||||||||||| ||| | ||| |  |||||||||||  |||||||    
T  3136777 aacaacacttgggcagtgcgcatgcctctacgcatgagtcggattagtcgtccacctttggttggtcggaaaccggtgcgaaag 3136694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 26043836 - 26043919
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||| || |||||||||||||| | ||||| |||||||||||| || | ||| |||||| |||||||  |||||||    
T  26043836 aacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgctcacctttggtgagtcagaaaccggggcgaaag 26043919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 35315980 - 35316063
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||| || |||||||||||||| | |||||  ||||||||||||||   ||| || |||||||||||| |||||||    
T  35315980 aacaacacttggccagtgcgcatgcctctacgcatgagctggattagtcgcccacttttggtgggtcggaaaccgatgcgaaag 35316063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 47219184 - 47219251
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    |||||||||||||| | ||||| ||||||||||| ||| | |||||| |||||||||||  |||||||    
T  47219184 tgcgcatgcctctacgcatgagccggattagtcgtccacctttgatgggtcggaaaccggtgcgaaag 47219251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 49021270 - 49021203
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    |||||||||||||| | ||||| ||||||||||| ||| ||||| || |||||||||||  |||||||    
T  49021270 tgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 49021203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 51060364 - 51060281
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| ||||||| |||||||||||||| | ||||   |||||||||| ||| ||||| || |||||||||||  |||||||    
T  51060364 aacaacacttggtcagtgcgcatgcctctacgcatgaactggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 51060281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 24146414 - 24146340
Alignment:
Q  12 gataacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaa 86  Q
    |||||||||| ||||||| | ||||||||||||   ||||| || |||||||| ||| |||||||| ||||||||    
T  24146414 gataacaacacttggtcaatacgcatgcctctagacatgagccgaattagtcgtccaccattgatgggtcggaaa 24146340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 26362050 - 26361976
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    |||||| |||||||| || ||||||||||| | | ||| |||||||||||| || | |||||| |||||||||||    
T  26362050 aacaacgtttggtcagtgtgcatgcctctacgcacgagccggattagtcgcacacctttgatgggtcggaaaccg 26361976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 7310767 - 7310703
Alignment:
Q  34 gcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||||||| | | ||| |||||||||||| |||| ||| || |||||||||||| |||||||    
T  7310767 gcatgcctctacgcacgagccggattagtcgctcatctttggtgggtcggaaaccgatgcgaaag 7310703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 2784956 - 2785030
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    ||||| ||||||||| |||||||||||||| | ||||||| ||||||||| ||||||||||||||||||||||||    
T  2784956 aacaagatttggtcagtgcgcatgcctctacgcatgagtcagattagtcgtccatcattgatgagtcggaaaccg 2785030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 30721937 - 30721885
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgccc 67  Q
    ||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||    
T  30721937 aacaacacttggtcagtgcgcatgtctctacgtatgagtcggattagtcgccc 30721885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 34356230 - 34356302
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaac 87  Q
    ||||||| ||||||| |||||||||||||||| ||||| ||||||| |||  || |||||||| |||||||||    
T  34356230 aacaacacttggtcagtgcgcatgcctctatgcatgagccggattaatcgtgcaccattgatgggtcggaaac 34356302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 3811773 - 3811690
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| ||||||| |||||||||||||| | ||||| ||||||| ||||||| | ||| || ||| |||||||| |||||||    
T  3811773 aacaacacttggtcaatgcgcatgcctctacgcatgagccggattactcgcccacctttggtgggtcagaaaccgatgcgaaag 3811690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 12864248 - 12864332
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaagt 99  Q
    ||||||| ||||||| |||||||||||||  | ||||| | ||||||||| ||| ||||| || |||||||||||  ||||||||    
T  12864248 aacaacacttggtcagtgcgcatgcctctgcgcatgagccagattagtcgtccaccattggtgggtcggaaaccggtgcgaaagt 12864332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 16034980 - 16035044
Alignment:
Q  34 gcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    |||||||| || ||| ||| |||||||||||| || ||||||||||||||||||||  |||||||    
T  16034980 gcatgcctatacgtacgagccggattagtcgctcaccattgatgagtcggaaaccggtgcgaaag 16035044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 20612617 - 20612542
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtc-ggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    ||||||| |||| || |||||||||||||||| ||||| | |||||||||| ||| ||||| || |||||||||||    
T  20612617 aacaacacttggccagtgcgcatgcctctatgcatgagccgggattagtcgtccaccattggtgggtcggaaaccg 20612542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 44773287 - 44773374
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaagtcaa 102  Q
    |||||| ||||| || || |||||||||| ||  |||| |||||||||||| || | |||||| |||||||||||  |||||||||||    
T  44773287 aacaacgtttggccagtgtgcatgcctctgtgcgtgagccggattagtcgctcacctttgatgggtcggaaaccggtgcgaaagtcaa 44773374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 6358233 - 6358159
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    ||||||| |||| || |||||||||||||| | ||||| ||||||||||| ||| ||||| || |||| ||||||    
T  6358233 aacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcgaaaaccg 6358159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 18649108 - 18649058
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgc 65  Q
    ||||| |||||| || |||||||||||||| | ||||||||||||||||||    
T  18649108 aacaatatttgggcagtgcgcatgcctctacgcatgagtcggattagtcgc 18649058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 10026698 - 10026626
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaac 87  Q
    |||||| ||||| || |||||||||||||| | ||||| ||||||||||| ||| | ||| || |||||||||    
T  10026698 aacaacgtttggccagtgcgcatgcctctacgcatgagccggattagtcgaccacctttggtgggtcggaaac 10026626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 19976882 - 19976818
Alignment:
Q  22 tttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaa 86  Q
    |||||||| |||||||| ||||| | || ||||| |||||||||||| | ||||||| |||||||    
T  19976882 tttggtcagtgcgcatgtctctacgcataagtcgaattagtcgcccacctttgatgaatcggaaa 19976818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 5029845 - 5029917
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaac 87  Q
    |||||| |||||||| |||||||||||||| | |||||| |||||||||||||||| |||||| |||||||||    
T  5029845 aacaacgtttggtcagtgcgcatgcctctacgcatgagttggattagtcgcccatctttgatgggtcggaaac 5029917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 10396501 - 10396575
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    |||||| ||||| || |||||||  ||||||| |||||||||||||||| ||||| ||||||  |||||||||||    
T  10396501 aacaacgtttggccagtgcgcatatctctatgcatgagtcggattagtcacccattattgataggtcggaaaccg 10396575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 5253305 - 5253222
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||| || |||||||||||||| | ||||| ||||||| ||||||| | ||| || |||||||||||  |||||||    
T  5253305 aacaacacttggccagtgcgcatgcctctacgcatgagccggattaatcgcccacctttggtgggtcggaaaccggtgcgaaag 5253222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 30788935 - 30788852
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    |||||| ||||| || |||||||||||||| | | ||| ||||||||||||||| | ||| || |||||||||||  |||||||    
T  30788935 aacaacgtttggccagtgcgcatgcctctaggcacgagccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 30788852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 14783483 - 14783419
Alignment:
Q  34 gcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||||||| | ||||| ||||||||||| ||| ||||| || |||||||||||  |||||||    
T  14783483 gcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 14783419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 2485237 - 2485305
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaagt 99  Q
    |||||||||||||| |||||||||||||||||||| || | |||||| |||||||||||| ||||||||    
T  2485237 tgcgcatgcctctacgtatgagtcggattagtcgctcacctttgatgggtcggaaaccgatgcgaaagt 2485305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 21375376 - 21375449
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaacc 88  Q
    |||||||||||  || ||||||||| |||| | ||||||||||||||||| ||||| ||||||  |||||||||    
T  21375376 aacaacatttgaccagtgcgcatgcttctacgcatgagtcggattagtcgtccatctttgatggatcggaaacc 21375449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 20255410 - 20255466
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaac 87  Q
    |||||||||||||| | ||||||||||||||||| ||| | ||| ||||||||||||    
T  20255410 tgcgcatgcctctacgcatgagtcggattagtcgtccacctttggtgagtcggaaac 20255466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 27648488 - 27648424
Alignment:
Q  34 gcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||||||| ||||||| ||||||||||| ||||| ||| ||  ||||||||||| |||||||    
T  27648488 gcatgcctctacgtatgagccggattagtcgtccatctttggtggatcggaaaccgatgcgaaag 27648424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 1538456 - 1538539
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||| || |||||||||||||| | ||||| ||||||| ||| ||| ||||| || |||||||||||  |||||||    
T  1538456 aacaacacttggccagtgcgcatgcctctacgcatgagccggattaatcgtccaccattggtgggtcggaaaccggtgcgaaag 1538539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 14728116 - 14728191
Alignment:
Q  23 ttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||||||||||||| | ||||| ||||||||| || || | |||||| |||||||||||  |||||||    
T  14728116 ttggtcagtgcgcatgcctctacgcatgagccggattagttgctcacctttgatgggtcggaaaccggtgcgaaag 14728191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 11845883 - 11845809
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    |||||| ||||| || |||||||||||||| ||||||| || |||| ||||||| | |||||| || ||||||||    
T  11845883 aacaacgtttggccagtgcgcatgcctctacgtatgagccgaattaatcgcccacctttgatgggttggaaaccg 11845809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 39099861 - 39099787
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    ||||||| |||| || ||| |||||||||| | ||||| ||||||||||||||| | ||| || |||||||||||    
T  39099861 aacaacacttggccagtgcacatgcctctacgcatgagccggattagtcgcccacctttggtgggtcggaaaccg 39099787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 38296777 - 38296737
Alignment:
Q  50 gagtcggattagtcgcccatcattgatgagtcggaaaccga 90  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  38296777 gagtcggattagtcgcccacctttgatgggtcggaaaccga 38296737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 39969981 - 39969914
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||||||||||   ||||||| ||||||||||||||||||||||  ||||||||||| |||||||    
T  39969981 tgcgcatgcctctacacatgagtcagattagtcgcccatcattgatggatcggaaaccgatgcgaaag 39969914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 43027349 - 43027416
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    |||||||||||||| | ||||| ||||||||||| ||||| |||||| |||||||||||| |||||||    
T  43027349 tgcgcatgcctctacgcatgagccggattagtcgtccatctttgatgggtcggaaaccgatgcgaaag 43027416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 45521196 - 45521279
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| ||| ||| |||||||||||||| | ||||| |||||||||||| || | |||||| |||||||||||  |||||||    
T  45521196 aacaacacttgatcagtgcgcatgcctctacgcatgagccggattagtcgctcacctttgatgggtcggaaaccggtgcgaaag 45521279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 583856 - 583902
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatg 77  Q
    |||||||||||||| | ||||||||||||||||||||| | ||||||    
T  583856 tgcgcatgcctctacgcatgagtcggattagtcgcccacctttgatg 583902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 8803121 - 8803165
Alignment:
Q  54 cggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    |||||||||||||||||| || || |||||||||||| |||||||    
T  8803121 cggattagtcgcccatcaatggtgggtcggaaaccgatgcgaaag 8803165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 54946285 - 54946352
Alignment:
Q  22 tttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    |||||||| | |||||||||||| | ||||| ||||||||||||||||||||| || |||||||||||    
T  54946285 tttggtcagtccgcatgcctctacgcatgagccggattagtcgcccatcattggtgggtcggaaaccg 54946352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 43458658 - 43458729
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaagtcaa 102  Q
    |||||||||||||| | | ||| ||||||||||| ||| | ||||||||||||||||||  |||||||||||    
T  43458658 tgcgcatgcctctacggacgagccggattagtcgtccacctttgatgagtcggaaaccgttgcgaaagtcaa 43458729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 55921063 - 55921146
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| ||||||| |||||||||||||| ||||||| ||||||| |||| || | ||| || |||||||||||  |||||||    
T  55921063 aacaacacttggtcagtgcgcatgcctctacgtatgagccggattaatcgctcacctttggtgggtcggaaaccggtgcgaaag 55921146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 20354682 - 20354739
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaacc 88  Q
    |||||||||||||| | ||||||||||||||||| |||  |||||||||| |||||||    
T  20354682 tgcgcatgcctctacgcatgagtcggattagtcgtccactattgatgagttggaaacc 20354739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 20421802 - 20421875
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaacc 88  Q
    ||||||| |||| || |||||||||||||| | ||||| | ||||| ||| |||||||||||| ||||||||||    
T  20421802 aacaacacttggccagtgcgcatgcctctacgcatgagccagattaatcgtccatcattgatgggtcggaaacc 20421875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 37369105 - 37369037
Alignment:
Q  34 gcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaagtcaa 102  Q
    ||||||||||| | | ||||||||| |||||||||  |||| ||| ||||||||||| |||||||||||    
T  37369105 gcatgcctctacgcacgagtcggataagtcgcccactattggtgaatcggaaaccgatgcgaaagtcaa 37369037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 6779256 - 6779323
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    |||||||||||||||| ||||| ||||||||||| ||| | ||| ||| |||||| |||| |||||||    
T  6779256 tgcgcatgcctctatgcatgagccggattagtcgtccacctttggtgaatcggaacccgatgcgaaag 6779323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 7246712 - 7246645
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    |||||||||||||| | ||||| ||||||||||||||| | ||| || |||||||||||  |||||||    
T  7246712 tgcgcatgcctctacgcatgagccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 7246645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 29895816 - 29895899
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||| || |||||||||||||| | ||||| ||||||||||| ||| ||||| ||  ||||||||||  |||||||    
T  29895816 aacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtggttcggaaaccggtgcgaaag 29895899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 37194859 - 37194913
Alignment:
Q  35 catgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    |||||||||| | ||||| ||||||||| |||| ||||||||| |||||||||||    
T  37194859 catgcctctacgcatgagccggattagttgcccgtcattgatgggtcggaaaccg 37194913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 40780935 - 40780869
Alignment:
Q  23 ttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    ||||||| |||||||||||||| | ||||| ||||||||||| ||| | ||| || |||||||||||    
T  40780935 ttggtcagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgggtcggaaaccg 40780869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 14124045 - 14124130
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaagtc 100  Q
    |||||||||||| || ||||||||||||||   | ||| |||||||||||| || ||||| || || ||||||||  |||||||||    
T  14124045 aacaacatttggccagtgcgcatgcctctacacacgagccggattagtcgctcaccattggtgggttggaaaccggtgcgaaagtc 14124130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 26480013 - 26479956
Alignment:
Q  33 cgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccga 90  Q
    |||||||||||| | ||||| || |||| ||| ||||||||||||| |||||||||||    
T  26480013 cgcatgcctctacgcatgagccgaattaatcgtccatcattgatgaatcggaaaccga 26479956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 55005375 - 55005317
Alignment:
Q  28 cattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaacc 88  Q
    ||||||||||||||||| | |  ||||||||||||||||||  ||||||| ||||||||||    
T  55005375 cattgcgcatgcctctacgcacaagtcggattagtcgccca--attgatgggtcggaaacc 55005317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 26325837 - 26325920
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| ||||||| |||||||||||||| | ||||| ||||||||||| ||| ||||| || |||||||||||  |||||||    
T  26325837 aacaacacttggtcagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 26325920  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 32151005 - 32150922
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||||||||||| ||||||||||| || | ||||| || ||||||||| || | |||||| |||| ||||||| |||||||    
T  32151005 aacaacatttggtcagtgcgcatgcctttacgcatgagccgaattagtcgctcacctttgatgggtcgaaaaccgatgcgaaag 32150922  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 41663939 - 41663856
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| ||||||| |||||||||||||| | |||||  |||||||||| ||| ||||| || |||||||||||  |||||||    
T  41663939 aacaacacttggtcagtgcgcatgcctctacgcatgagctggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 41663856  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 10422813 - 10422896
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||| || |||||||||||||| | ||||| ||||||||||| ||| | ||| | ||||||||||||  |||||||    
T  10422813 aacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtaagtcggaaaccggtgcgaaag 10422896  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 32142929 - 32142846
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||| || ||||||||||| || | ||||| || ||||||||| || | |||||| |||||||||||| |||||||    
T  32142929 aacaacacttggccagtgcgcatgcctttacgcatgagccgaattagtcgctcacctttgatgggtcggaaaccgatgcgaaag 32142846  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 28324663 - 28324615
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtc 63  Q
    ||||||| ||||||| |||||||||||||| | ||||| ||||||||||    
T  28324663 aacaacacttggtcagtgcgcatgcctctacgcatgagccggattagtc 28324615  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 34697379 - 34697443
Alignment:
Q  34 gcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||||||| | ||||| |||||||||||||||   |||||| || ||||||||| |||||||    
T  34697379 gcatgcctctacgcatgagccggattagtcgcccacttttgatgggttggaaaccgatgcgaaag 34697443  T

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Target: scaffold0029 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 41071 - 41145
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    ||||||| ||||||| || ||||||||||| | | ||| ||||||||||||||||| ||| ||||||||||||||    
T  41071 aacaacacttggtcagtgtgcatgcctctacgcacgagccggattagtcgcccatctttggtgagtcggaaaccg 41145  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 48804710 - 48804793
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||| || |||||||||||||| | ||||| ||||||||||| ||| ||||| || |||||||||||  |||||||    
T  48804710 aacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 48804793  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 3353451 - 3353538
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaagtcaa 102  Q
    |||||||||||| || |||||||||||||| | | ||| ||||||||||| ||| | ||||||  || |||||||  |||||||||||    
T  3353451 aacaacatttggccagtgcgcatgcctctacgcacgagccggattagtcgtccacctttgatggatcagaaaccggtgcgaaagtcaa 3353538  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 4195284 - 4195201
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||||||||  | |||||||||||||| | ||||| |||||||| || ||| ||||| || || ||||||||| |||||||    
T  4195284 aacaacatttggctagtgcgcatgcctctacgcatgagccggattagccgtccaccattggtgggttggaaaccgatgcgaaag 4195201  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 17748448 - 17748381
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    |||||||||||||| ||| ||| ||||||||||| ||| | ||| || |||||||||||| |||||||    
T  17748448 tgcgcatgcctctacgtacgagccggattagtcgtccacctttgttgggtcggaaaccgatgcgaaag 17748381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 38578933 - 38578866
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    |||||||||||||| | ||||| ||||||||||||||| | ||| || |||||||||||  |||||||    
T  38578933 tgcgcatgcctctacgcatgagccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 38578866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 48551900 - 48551967
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    |||||||||||||| ||||||| ||||||||||| ||| | ||||||  ||||||||||  |||||||    
T  48551900 tgcgcatgcctctacgtatgagccggattagtcgtccacctttgatggatcggaaaccggtgcgaaag 48551967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 13095885 - 13095959
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    ||||||| |||| || |||||||||||||| | ||||| |||||||||||| || | ||| || |||||||||||    
T  13095885 aacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgctcacctttggtgggtcggaaaccg 13095959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 45960085 - 45960011
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccg 89  Q
    ||||||| ||||||| |||||||||||||| | || || |||||||||||| || | ||||||  ||||||||||    
T  45960085 aacaacacttggtcagtgcgcatgcctctacgcataagccggattagtcgctcacctttgatggatcggaaaccg 45960011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 43346845 - 43346788
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaacc 88  Q
    |||||||||||||| ||| ||| |||||||||||| |||| ||| || ||||||||||    
T  43346845 tgcgcatgcctctacgtacgagccggattagtcgctcatctttggtgggtcggaaacc 43346788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 24983485 - 24983417
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtc-ggaaaccgaagcgaaag 98  Q
    |||||||||||||| | ||||| ||||||||||| ||| ||||| || ||| ||||||||| |||||||    
T  24983485 tgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtctggaaaccgatgcgaaag 24983417  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 42906 - 42830
Alignment:
Q  23 ttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaagt 99  Q
    ||||||| ||||||||||||||   ||||| ||||||||||||||| | ||| || |||||||||||  ||||||||    
T  42906 ttggtcagtgcgcatgcctctacacatgagccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaagt 42830  T

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Target: scaffold0291 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 6882 - 6965
Alignment:
Q  15 aacaacatttggtcattgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatgagtcggaaaccgaagcgaaag 98  Q
    ||||||| |||| || |||||||||||||| | ||||| |||||||||||| || | ||| || |||||||||||  |||||||    
T  6882 aacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgctcacctttggtgggtcggaaaccggtgcgaaag 6965  T

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Target: scaffold0209 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 12616 - 12662
Alignment:
Q  31 tgcgcatgcctctatgtatgagtcggattagtcgcccatcattgatg 77  Q
    |||||||||||||| | ||||||||||||||||||||| | ||||||    
T  12616 tgcgcatgcctctacgcatgagtcggattagtcgcccacctttgatg 12662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 17456 - 17492
Alignment:
Q  54 cggattagtcgcccatcattgatgagtcggaaaccga 90  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  17456 cggattagtcgcccaccattgatgggtcggaaaccga 17492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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