View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_48 (Length: 259)
Name: NF18417_high_48
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_48 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 33409706 - 33409936
Alignment:
| Q |
18 |
gtaacaagtatcggagatataaattagttacttacattttagtcctaatagataatagtataaaatataaatagtttgtaaccacctcattagaatagaa |
117 |
Q |
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| T |
33409706 |
gtaacaagtatcggagatataaattagttacttacattttagtcctaatagataatagtataaaacataaatagtttgtaaccaccttattagaatagaa |
33409805 |
T |
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| Q |
118 |
ctttaacttatgtatacaattttatgttcatcaatacaccggttagtagtttttctctcannnnnnnccatggatgtcatgtttc---ataataaggaag |
214 |
Q |
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| T |
33409806 |
ctttaacttatgtatacaattttatgttcatcaatacaccggttagtattttttctctcattttttt-catggatgtcatgtttcataataataaggaag |
33409904 |
T |
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| Q |
215 |
cgcctccccctatttatttttcatatattctt |
246 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33409905 |
cgcctccccctatttatttttcatatattctt |
33409936 |
T |
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