View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_5 (Length: 636)
Name: NF18417_high_5
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 16 - 618
Target Start/End: Original strand, 6203389 - 6203995
Alignment:
| Q |
16 |
cagattcaacttcaccatttccaccattaccaattttcgtgaaattttcactcgcaaaagagcctaatacagattcagcagagggcttaggtttagcctt |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6203389 |
cagattcaacttcaccatttccacgattaccaattttcgtgaaattttcactcgcaaaagagcctaatacagattcagcagagggcttaggtatagcctt |
6203488 |
T |
|
| Q |
116 |
aatacgtgcatcattaacaacagaagacgaatttgattgaacctttctccgactaattttatcgttctcatccggcgcaaactccttaagaacatcatct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6203489 |
aatacgtgcatcattaacaacagaagacgaatttgattgaacctttctccgactaattttatcgttctcatccggcgcaaactccttaagaacatcatct |
6203588 |
T |
|
| Q |
216 |
acaatactctcacaaaccttatcatctctacttttcttaaaattagcagaagtaaacatcgacgaaactcttgatccgcccatcatagcagcagcagctg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6203589 |
acaatactctcacaaaccttatcatctctacttttcttaaaattagcagaagtaaacatcgacgaaactcttgatccgcccatcatagcagcagcagctg |
6203688 |
T |
|
| Q |
316 |
ataatttagccgcagaagaagaaac---aggacgcttgatctgtgaagcgtctttctctttcttccgtttgggtttctccgattcaccatcgaattcttc |
412 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6203689 |
ataatttagccgcagaagaagaaacagaaggacgcttgatctgtgaagcatctttctctttcttccgttgaggtttctccgattcaccatcgaattcttc |
6203788 |
T |
|
| Q |
413 |
gtctgaggaaagggagaaaccggctttggaccaatcctcttcttcgccttcatcgttgtaaccaaatccgtcgtcatcgacgatgaatgagcgggattgt |
512 |
Q |
| |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||| |
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| T |
6203789 |
gtctgaggaaagggaaaaaccggttttggaccaatcctcttcttcgccttcatcgttataaccaaatccgtcgtcatcaacaataaatgagcgggattgt |
6203888 |
T |
|
| Q |
513 |
tcgc-ggcggctggcgactaaggcggtgtattcatcctcagggattgtgtcgtagatagggttttcgagtcggatttgtggtgtggtggtggatcgagga |
611 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6203889 |
tcgcgggcggctggcgactaaggcggtgtattcatcctcagggattgtgtcgtagatagggttttcgagtcggatttgtggtgtggtggtggatcgagga |
6203988 |
T |
|
| Q |
612 |
ccgttgg |
618 |
Q |
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||||||| |
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| T |
6203989 |
ccgttgg |
6203995 |
T |
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