View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_52 (Length: 237)
Name: NF18417_high_52
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_52 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 30044700 - 30044588
Alignment:
| Q |
17 |
cacagacaccttggaaggaacacatttatgccacacagcaagacctgcatcatcagtcacctgaacctccatattggttaagaaacaataagtcccctta |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30044700 |
cacagacaccttggaaggaacacatttatgccacacatcaagacctgcaacaacagtcacctgaacctccatattggttaagaaacaataagtcccctta |
30044601 |
T |
|
| Q |
117 |
accgtataaccat |
129 |
Q |
| |
|
||||||||||||| |
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| T |
30044600 |
accgtataaccat |
30044588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 10772690 - 10772658
Alignment:
| Q |
17 |
cacagacaccttggaaggaacacatttatgcca |
49 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
10772690 |
cacagacaccttggaaggaacacaattatgcca |
10772658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 24397 - 24285
Alignment:
| Q |
17 |
cacagacaccttggaaggaacacatttatgccacacagcaagacctgcatcatcagtcacctgaacctccatattggttaagaaacaataagtcccctta |
116 |
Q |
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||||||||||||||||||||||||||||||| | ||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24397 |
cacagacaccttggaaggaacacatttatgctatacatcaagaccttcaacatcagtcacctgaacctccttattggttaagaaacaataagtcccctta |
24298 |
T |
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| Q |
117 |
accgtataaccat |
129 |
Q |
| |
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||||||||||||| |
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| T |
24297 |
accgtataaccat |
24285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 14454536 - 14454648
Alignment:
| Q |
17 |
cacagacaccttggaaggaacacatttatgccacacagcaagacctgcatcatcagtcacctgaacctccatattggttaagaaacaataagtcccctta |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||| |||| |||||||||||||||||||||||| |
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| T |
14454536 |
cacagacaccttggaaggaacacatttatgccacacatcaagacctacagcatcagtcaccggaacctccgtattcgttaagaaacaataagtcccctta |
14454635 |
T |
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| Q |
117 |
accgtataaccat |
129 |
Q |
| |
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||||||||||||| |
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| T |
14454636 |
accgtataaccat |
14454648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 26892791 - 26892684
Alignment:
| Q |
17 |
cacagacaccttggaaggaacacatttatgccacacagcaagacctgcatcatcagtcacctgaacctccatattggttaagaaacaataagtcccctta |
116 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| ||| || ||| ||| ||| |||||| || ||||||| |||||||||||||||||||||||| |
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| T |
26892791 |
cacagataccttggaaggaacacatttatgccacacatcaaaacatgcgccattagttacctgacccgccatattagttaagaaacaataagtcccctta |
26892692 |
T |
|
| Q |
117 |
accgtata |
124 |
Q |
| |
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|| ||||| |
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|
| T |
26892691 |
actgtata |
26892684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 42397331 - 42397440
Alignment:
| Q |
20 |
agacaccttggaaggaacacatttatgccacacagcaagacctgcatcatcagtcacctgaacctccatattggttaagaaacaataagtccccttaacc |
119 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||| || ||| ||||||||| ||||||| ||||||||||| |||| |||||||||| |
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| T |
42397331 |
agacaccttggaaggaacaagtttatgccacacatcaagacctgcgccactagttacctgaaccgccatattagttaagaaacagtaagaccccttaacc |
42397430 |
T |
|
| Q |
120 |
gtataaccat |
129 |
Q |
| |
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||||| |||| |
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| T |
42397431 |
gtatagccat |
42397440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 7638257 - 7638368
Alignment:
| Q |
18 |
acagacaccttggaaggaacacatttatgccacacagcaagacctgcatcatcagtcacctgaacctccatattggttaagaaacaataagtccccttaa |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7638257 |
acagacaccttggaaggaacacaattatgccacacatcaagagctgcatcaccagttacctgaacctccataatggttaagaaacaataagtccccttaa |
7638356 |
T |
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| Q |
118 |
ccgtataaccat |
129 |
Q |
| |
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|||||||||||| |
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| T |
7638357 |
ccgtataaccat |
7638368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 18489180 - 18489068
Alignment:
| Q |
17 |
cacagacaccttggaaggaacacatttatgccacacagcaagacctgcatcatcagtcacctgaacctccatattggttaagaaacaataagtcccctta |
116 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||| || || |||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18489180 |
cacagacaccttggacggaacacatttatgccacacatcaagacctacaccaccagttacctgaacctccatattagttaagaaacaataagtcccctta |
18489081 |
T |
|
| Q |
117 |
accgtataaccat |
129 |
Q |
| |
|
||||||||||||| |
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|
| T |
18489080 |
accgtataaccat |
18489068 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 16478221 - 16478333
Alignment:
| Q |
17 |
cacagacaccttggaaggaacacatttatgccacacagcaagacctgcatcatcagtcacctgaacctccatattggttaagaaacaataagtcccctta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||| ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16478221 |
cacagacaccttggaaggaacacatttatcccacacatcaagacatgcatcactagttacctgaacctccatattagttaagaaacaataagtcccctta |
16478320 |
T |
|
| Q |
117 |
accgtataaccat |
129 |
Q |
| |
|
||| | ||||||| |
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|
| T |
16478321 |
accttttaaccat |
16478333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 27842330 - 27842412
Alignment:
| Q |
133 |
ttttctttttcgtttacaaagtcacaaacaaagacatggagaaatggaaagacactttggttaagagatagtgagtgttttat |
215 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
27842330 |
ttttttttttcgtttgcaaagtcacaaacaaagacatagaaaaatggaaacacactttggttaagagataatgagtgttttat |
27842412 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 21824689 - 21824577
Alignment:
| Q |
17 |
cacagacaccttggaaggaacacatttatgccacacagcaagacctgcatcatcagtcacctgaacctccatattggttaagaaacaataagtcccctta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||| ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21824689 |
cacagacaccttggaaggaacacatttatcccacacatcaagacatgcatcactagttacctgaacctccatattagttaagaaacaataagtcccctta |
21824590 |
T |
|
| Q |
117 |
accgtataaccat |
129 |
Q |
| |
|
||| | ||||||| |
|
|
| T |
21824589 |
accttttaaccat |
21824577 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 39919937 - 39920037
Alignment:
| Q |
24 |
accttggaaggaacacatttatgccacacagcaagacctgcatcatcagtcacctgaacctccatattggttaagaaacaataagtccccttaaccgtat |
123 |
Q |
| |
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|||||||||||||||| | ||||||||||| ||| |||| | || || |||||| |||||||||| |||||||| || |||||||||||||| |||| |
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| T |
39919937 |
accttggaaggaacacgtctatgccacacatcaaaacctacgccactggttacctgaccctccatattagttaagaagcagtaagtccccttaactgtat |
39920036 |
T |
|
| Q |
124 |
a |
124 |
Q |
| |
|
| |
|
|
| T |
39920037 |
a |
39920037 |
T |
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