View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_53 (Length: 237)
Name: NF18417_high_53
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_53 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 31537211 - 31537406
Alignment:
| Q |
32 |
acaagtgctgaaaagcaataaccaaattaattccatattataacaaaagcttattcnnnnnnngttataacagaagcagatatagtgattgcataatatt |
131 |
Q |
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| T |
31537211 |
acaattgcagaaaagcaataaccaaattaattccatattataacaaaagcttattcaaaaaaagttataacagaagcagatatagtgattgcataatatt |
31537310 |
T |
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| Q |
132 |
gaaagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagctattttgaaccttgtattcaaatgttctgtgctcct |
227 |
Q |
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| T |
31537311 |
gaaagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagccattttgaatcttgtattcaaatgttctgtgctcct |
31537406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 31532031 - 31532124
Alignment:
| Q |
134 |
aagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagctattttgaaccttgtattcaaatgttctgtgctcct |
227 |
Q |
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| T |
31532031 |
aagaagaagaaaaggatcaaagtatgcgtgagatacccattatattctcaaagtaagcaattttgaaccttgtattcaaatgttatgtgctcct |
31532124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 31529792 - 31529836
Alignment:
| Q |
42 |
aaaagcaataaccaaattaattccatattataacaaaagcttattc |
87 |
Q |
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| T |
31529792 |
aaaagcaataaccaa-ttaattccatattataacagaagcttattc |
31529836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 31531897 - 31531950
Alignment:
| Q |
32 |
acaagtgctgaaaagcaataaccaaattaattccatattataacaaaagcttatt |
86 |
Q |
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| T |
31531897 |
acaagtgcagaaaagcaataacc-aattaattccacattataacagacgcttatt |
31531950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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