View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_54 (Length: 221)
Name: NF18417_high_54
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 84 - 197
Target Start/End: Original strand, 36346205 - 36346318
Alignment:
| Q |
84 |
atatagattataatattttgttaactaattgcgaggataaatggtcatcaacaacaattgagtaatgaaaggttaaattggggaatgtttgttaaccaca |
183 |
Q |
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| T |
36346205 |
atatagattataatattttgttaactaattgcgaggataaatggtcatcaacaacaattgagtaatgaaaggttaaattggggaatgtttgttaaccacg |
36346304 |
T |
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| Q |
184 |
gtaagcaagatttg |
197 |
Q |
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| T |
36346305 |
gcaagcaagatttg |
36346318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 36324549 - 36324660
Alignment:
| Q |
84 |
atatagattataatattttgttaactaattgcgaggataaatggtcatcaacaacaattgagtaatgaaaggttaaattggggaatgtttgttaaccaca |
183 |
Q |
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||||||| |||||||||||||||||||||||| ||||||| |||| |||| || | |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36324549 |
atatagaatataatattttgttaactaattgcaaggataattggttatcagcatctattgagtaatgaaaggttaaattggggaatgtttgttaaccaaa |
36324648 |
T |
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| Q |
184 |
gtaagcaagatt |
195 |
Q |
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| T |
36324649 |
gtaagcaagatt |
36324660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 36307123 - 36307225
Alignment:
| Q |
93 |
ataatattttgttaactaattgcgaggataaatggtcatcaacaacaattgagtaatgaaaggttaaattggggaatgtttgttaaccacagtaagcaag |
192 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||| || ||||||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
36307123 |
ataatattttgttaactaattgcgaggataattggtcatcaacaactattaagcaatgaaaggttaaatcggggaatgtttggtaaccaaagtaagcaag |
36307222 |
T |
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| Q |
193 |
att |
195 |
Q |
| |
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||| |
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| T |
36307223 |
att |
36307225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 36328187 - 36328296
Alignment:
| Q |
87 |
tagattataatattttgttaactaattgcgaggataaatggtcatcaacaacaattgagtaatgaaaggttaaattggggaatgtttgttaaccacagta |
186 |
Q |
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|||| |||||||||||| || |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
36328187 |
tagaatataatattttgctagctaattgcgaggataataggtcatcaacaactattgagacatgaaaggttaaattggggaatgtttgttaaccatagta |
36328286 |
T |
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| Q |
187 |
agcaagattt |
196 |
Q |
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|||||||||| |
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| T |
36328287 |
agcaagattt |
36328296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 36309940 - 36310039
Alignment:
| Q |
96 |
atattttgttaactaattgcgaggataaatggtcatcaacaacaattgagtaatgaaaggttaaattggggaatgtttgttaaccacagtaagcaagatt |
195 |
Q |
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|||||||||||||||||||||||||||| ||||||||| || | ||||||||||||| |||||||||||||||||||||||||||| || |||||||||| |
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| T |
36309940 |
atattttgttaactaattgcgaggataattggtcatcagcacctattgagtaatgaatggttaaattggggaatgtttgttaaccaaagcaagcaagatt |
36310039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 36338442 - 36338495
Alignment:
| Q |
84 |
atatagattataatattttgttaactaattgcgaggataaatggtcatcaacaa |
137 |
Q |
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||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
36338442 |
atatagaatataatattttgttaagtaattgcgaggataattggtcattaacaa |
36338495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 36346133 - 36346168
Alignment:
| Q |
14 |
aaaagaacatgattagataaaatacattgtacaact |
49 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
36346133 |
aaaagaacatgattagataaaatacattgtacaact |
36346168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 36307046 - 36307080
Alignment:
| Q |
14 |
aaaagaacatgattagataaaatacattgtacaac |
48 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
36307046 |
aaaagaacgtgattagataaaatacattgtacaac |
36307080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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