View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_high_55 (Length: 209)
Name: NF18417_high_55
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 48592282 - 48592103
Alignment:
| Q |
11 |
catcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgtt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592282 |
catcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgtt |
48592183 |
T |
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| Q |
111 |
aacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgat |
190 |
Q |
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| T |
48592182 |
aacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgat |
48592103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 48601977 - 48601798
Alignment:
| Q |
11 |
catcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgtt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48601977 |
catcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgtt |
48601878 |
T |
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| Q |
111 |
aacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgat |
190 |
Q |
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| T |
48601877 |
aacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgat |
48601798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 23232050 - 23232229
Alignment:
| Q |
11 |
catcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgtt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23232050 |
catcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgtt |
23232149 |
T |
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| Q |
111 |
aacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgat |
190 |
Q |
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||||| |||||| ||| |||||||||||||||||||| | ||| |||||| | || ||||||| ||| ||||| |||| |
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| T |
23232150 |
aacaactataaatcgagcagagccaagtcgaagggatataagaggtccatatcgctcagagaggtcgcggaaggcatgat |
23232229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 23224717 - 23224896
Alignment:
| Q |
11 |
catcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgtt |
110 |
Q |
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||||||| ||| ||||| ||||||||| ||| ||||||||||| ||||||| ||||| | ||| |||||||||||||| ||||||||||| | | |
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| T |
23224717 |
catcatcgtagacaactgtgttgatggcaatgttcattttacgggaagaataaacaagctcgtttgttttgagaaactcttttgcgagtgatggggaact |
23224816 |
T |
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| Q |
111 |
aacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgat |
190 |
Q |
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||||| ||||||| || || ||||||||||||||||| | || |||||| |||| ||||||| ||||||||| |||| |
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| T |
23224817 |
aacaacgataaatggaacagaaccaagtcgaagggatataaggggtccatatcgatcagagaggtcgcgaaaggcttgat |
23224896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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