View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18417_low_1 (Length: 778)

Name: NF18417_low_1
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18417_low_1
NF18417_low_1
[»] chr7 (3 HSPs)
chr7 (15-764)||(12105375-12106127)
chr7 (36-146)||(10675933-10676046)
chr7 (421-564)||(1445666-1445809)
[»] chr6 (2 HSPs)
chr6 (424-649)||(10116388-10116613)
chr6 (253-315)||(10116043-10116103)
[»] chr3 (1 HSPs)
chr3 (421-663)||(45810118-45810360)
[»] chr2 (8 HSPs)
chr2 (421-650)||(821315-821544)
chr2 (421-617)||(410492-410688)
chr2 (498-663)||(965158-965323)
chr2 (506-650)||(957801-957945)
chr2 (424-644)||(1403721-1403941)
chr2 (111-181)||(405155-405225)
chr2 (424-562)||(1400082-1400220)
chr2 (333-385)||(957675-957728)


Alignment Details
Target: chr7 (Bit Score: 691; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 15 - 764
Target Start/End: Complemental strand, 12106127 - 12105375
Alignment:
Q  15 cacagaaattctatcaaactcaccgctgatctaaacatatacttagtgtctaccttc---aacatgttttctatttatctcttaattaataatactaatt 111  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||    
T  12106127 cacagaaattctaccaaactcaccgctgatctaaacatgcacttagtgtctaccttcttcaacatgttttctgtttatctcttaattaataatactaatt 12106028  T
Q  112 taagggtccttcatcgacatttcaaaattgaccaacaaacctaaatcttgtctgccaatgcctgctacactaccgttttaaaattaaccggttattcatt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12106027 taagggtccttcatcgacatttcaaaattgaccaacaaacctaaatcttgtctgccaatgcctgctacactaccgttttaaaattaaccggttattcatt 12105928  T
Q  212 ccttatgcagcaaataactaatgtcaataaaccaaatctgcaaaaagatcatgcaagtaaaaagctaaatcaattaaggataaatttttcttaatttgtg 311  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12105927 ccttatgcagcaaataactaatgtcaataaaccaaatcttcaaaaagatcatgcaagtaaaaagctaaatcaattaaggataaatttttcttaatttgag 12105828  T
Q  312 cacaaagttcataaaatcagcaaatccaacaatctcatggtagcaactaatgaacaaatgacagaatagagaaactactactacttacataacgatattg 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12105827 cacaaagttcataaaatcagcaaatccaacaatctcatggtagcaactaatgaacaaatgacagaatagagaaactactactacttacataacgatattt 12105728  T
Q  412 aaagttattataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagaccgtttcccgaagcaccagattgac 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12105727 aaagttattataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagactgtttcccgaagcaccagattgac 12105628  T
Q  512 atattttctaaaactgttgaattcttcagaataaattttgctaatataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttc 611  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12105627 atattttctaaaactgttgaattcttcagaataaattttgctaacataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttc 12105528  T
Q  612 taaggtgtgatgaaaggcaacctggaacagattttggatgggaccacttttcattctcatattctccaaagtatccatccccccaaaaacttccttctat 711  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  12105527 taaggtttgatgaaaggcaacctggaacagattttggatgggaccacttttcattctcatattctccaaagtatccatcctcccaaaaacttccttttat 12105428  T
Q  712 gtgctgttaataatacaaaagaaataaattgatacatacttgtatgttaaaaa 764  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12105427 gtgctgttaataatacaaaagaaataaattgatacatacttgtatgttaaaaa 12105375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 10675933 - 10676046
Alignment:
Q  36 accgctgatctaaacatatacttagtgtctaccttc---aacatgttttctatttatctcttaattaataatactaatttaagggtccttcatcgacatt 132  Q
    ||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||| ||| ||||||||||||||||||  ||||||    
T  10675933 accgctgatctaaacatgtacttagtgtctaccttcttcaacatgttttctatttatctcttaattaatgataataatttaagggtccttcactgacatt 10676032  T
Q  133 tcaaaattgaccaa 146  Q
     ||||| |||||||    
T  10676033 gcaaaagtgaccaa 10676046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 421 - 564
Target Start/End: Original strand, 1445666 - 1445809
Alignment:
Q  421 ataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagaccgtttcccgaagcaccagattgacatattttct 520  Q
    ||||| ||||| || ||||||||||||||| |||||||| ||||||| |  ||||||||| ||||| ||||| | ||||||||| ||||||||| |||||    
T  1445666 ataaaatgaaaatttacatgttgcagaagcccttgaacatgaggttagttctctttctatctcagatcgttttctgaagcaccaaattgacatagtttct 1445765  T
Q  521 aaaactgttgaattcttcagaataaattttgctaatataatgtg 564  Q
    ||||||| |||||| ||||||||| || ||||||| ||| ||||    
T  1445766 aaaactgatgaattgttcagaatatatgttgctaacatagtgtg 1445809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 424 - 649
Target Start/End: Original strand, 10116388 - 10116613
Alignment:
Q  424 aattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagaccgtttcccgaagcaccagattgacatattttctaaa 523  Q
    ||||||||||| |||||||| |||||| |||| ||| |||| |||   ||||||||||| ||||||||||||| | ||||||||||||||| ||||||||    
T  10116388 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagaccgtttcccgcaacaccagattgacatagtttctaaa 10116487  T
Q  524 actgttgaattcttcagaataaattttgctaatataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggtgtgatg 623  Q
    ||| | | |||||  ||||||||  | ||||  ||||||||||||| ||||||||||  || | |||| || || || ||||||||| |||||| |||||    
T  10116488 actctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaaaattcaaattcccgcatagtacaagttgtaaggtttgatg 10116587  T
Q  624 aaaggcaacctggaacagattttgga 649  Q
    |||| ||||||||||||  |||||||    
T  10116588 aaagacaacctggaacattttttgga 10116613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 10116043 - 10116103
Alignment:
Q  253 aaaaagatcatgcaagtaaaaagctaaatcaattaaggataaatttttcttaatttgtgcaca 315  Q
    |||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||    
T  10116043 aaaaagatcatgcaagtaaaaa-ctaaatcaattaa-gatacatttttcttaatttgtgcaca 10116103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 421 - 663
Target Start/End: Original strand, 45810118 - 45810360
Alignment:
Q  421 ataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagaccgtttcccgaagcaccagattgacatattttct 520  Q
    ||||||||||||||||||| |||||||||| |||| ||| || | |||| || ||||||||| ||||||||| | |  |||||| |||| |||| |||||    
T  45810118 ataaattgaaagttgacattttgcagaagcccttggacatgaagataatagtttttctattttagaccgttttctgctgcaccaaattgtcatagtttct 45810217  T
Q  521 aaaactgttgaattcttcagaataaattttgctaatataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggtgtg 620  Q
    |||||| ||| |||||||||||||||  ||||||| ||||  |||| ||  |||| |||| ||| ||||||||| || || || |||||  | |||| |     
T  45810218 aaaacttttgcattcttcagaataaaccttgctaacataacatgattacgttgtaagcctgcaaatgcaaagtcccgcatagtgcaagtcgtgaggttta 45810317  T
Q  621 atgaaaggcaacctggaacagattttggatgggaccacttttc 663  Q
    |||||||||||  ||||||||||||||||| || ||| |||||    
T  45810318 atgaaaggcaagttggaacagattttggataggcccagttttc 45810360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 421 - 650
Target Start/End: Complemental strand, 821544 - 821315
Alignment:
Q  421 ataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagaccgtttcccgaagcaccagattgacatattttct 520  Q
    ||||| |||||||||||||||||||||||| ||||  || |  | |||||| ||||||||||||||  ||||   |  || |||||||| |||| |||||    
T  821544 ataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcagattgtttattgttgctccagattgtcatagtttct 821445  T
Q  521 aaaactgttgaattcttcagaataaattttgctaatataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggtgtg 620  Q
    |||||| | | |||||||||||||||| ||||||| |||||||||| ||  ||| ||||| ||| ||||||||| || || || |||||| |||||| |     
T  821444 aaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaaggttta 821345  T
Q  621 atgaaaggcaacctggaacagattttggat 650  Q
    |||||| ||||| |||||||||||| ||||    
T  821344 atgaaacgcaacttggaacagatttcggat 821315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 421 - 617
Target Start/End: Complemental strand, 410688 - 410492
Alignment:
Q  421 ataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagaccgtttcccgaagcaccagattgacatattttct 520  Q
    ||||||||||||||||||||||| |||||| |||| ||| |||| |||| ||||||||| || |||| |||||  |  |||| |||| | |||| ||  |    
T  410688 ataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgt 410589  T
Q  521 aaaactgttgaattcttcagaataaattttgctaatataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggt 617  Q
    |||||| ||| |||||| ||||||||||||||||| ||||||||| ||   ||||||||| ||| ||| ||||| || || || |||||| ||||||    
T  410588 aaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaagttgtaaggt 410492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 498 - 663
Target Start/End: Original strand, 965158 - 965323
Alignment:
Q  498 agcaccagattgacatattttctaaaactgttgaattcttcagaataaattttgctaatataatgtgataactctgtaggcctccaattgcaaagtcacg 597  Q
    ||||||| ||||||||| ||||||||||| ||| ||||| |||||||||| ||||||  |||||||||| ||  ||| ||||| ||  ||||||||| |     
T  965158 agcaccacattgacatagtttctaaaactcttgcattctccagaataaatcttgctagcataatgtgattacgttgttggcctgcatatgcaaagtccca 965257  T
Q  598 gatcgtacaagttctaaggtgtgatgaaaggcaacctggaacagattttggatgggaccacttttc 663  Q
     || || |||||| |||||| ||||| ||| |||| ||||||| ||| ||||| || ||| |||||    
T  965258 catagtgcaagttgtaaggtttgatgtaagacaacttggaacaaattctggattggcccaattttc 965323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 506 - 650
Target Start/End: Original strand, 957801 - 957945
Alignment:
Q  506 attgacatattttctaaaactgttgaattcttcagaataaattttgctaatataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtac 605  Q
    ||||||| | ||||||||||| | | ||||||||||||||||  |||||| ||||  |||| ||| ||| ||||| ||| ||||||||| || || || |    
T  957801 attgacaaagtttctaaaactctcgcattcttcagaataaataatgctaaaataagatgattactttgttggcctgcaagtgcaaagtcccgcatagtgc 957900  T
Q  606 aagttctaaggtgtgatgaaaggcaacctggaacagattttggat 650  Q
    ||||| |||||| | |||||||||||| |||||| ||||| ||||    
T  957901 aagttgtaaggtttaatgaaaggcaacttggaactgatttaggat 957945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 424 - 644
Target Start/End: Complemental strand, 1403941 - 1403721
Alignment:
Q  424 aattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagaccgtttcccgaagcaccagattgacatattttctaaa 523  Q
    ||||| |||||||||||||||||| ||  ||| ||| |||| ||||  |||||||  || || || | ||  | ||||||||||||||||| ||||||||    
T  1403941 aattgtaagttgacatgttgcagatgcctttggacatgaggataatactctttctgctttaggccatctcttgtagcaccagattgacatagtttctaaa 1403842  T
Q  524 actgttgaattcttcagaataaattttgctaatataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggtgtgatg 623  Q
    ||| ||| ||| | |||||||||  ||||||| |||||| ||| ||  ||| || || |||   ||||||| || ||  | |||||| |||||| | |||    
T  1403841 actcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtcccgcatattgcaagttgtaaggtttaatg 1403742  T
Q  624 aaaggcaacctggaacagatt 644  Q
    ||||||||| |||||| ||||    
T  1403741 aaaggcaacttggaactgatt 1403721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 405225 - 405155
Alignment:
Q  111 ttaagggtccttcatcgacatttcaaaattgaccaacaaacctaaatcttgtctgccaatgcctgctacac 181  Q
    |||||| ||||||||| ||||||||||| ||||||| ||||| ||| |||||||||  |||||| ||||||    
T  405225 ttaaggatccttcatccacatttcaaaaatgaccaaaaaaccaaaagcttgtctgcatatgcctactacac 405155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 562
Target Start/End: Complemental strand, 1400220 - 1400082
Alignment:
Q  424 aattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagaccgtttcccgaagcaccagattgacatattttctaaa 523  Q
    ||||||||||||||||||| ||||||| |||| ||| |||  ||||  |||||||  ||  | || | ||  | |||||||||||| |||| ||||||||    
T  1400220 aattgaaagttgacatgttacagaagcccttggacatgagaataatactctttctgctttgggccatctcatgtagcaccagattggcatagtttctaaa 1400121  T
Q  524 actgttgaattcttcagaataaattttgctaatataatg 562  Q
    ||| ||| ||||| |||||||||  ||||||| ||||||    
T  1400120 actcttgcattctgcagaataaaccttgctaacataatg 1400082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 957675 - 957728
Alignment:
Q  333 aaatccaacaatctcatggtagcaactaatg-aacaaatgacagaatagagaaa 385  Q
    |||||||||||| ||||||||| | |||||| |||||| |||||||||||||||    
T  957675 aaatccaacaatttcatggtagaagctaatgaaacaaaagacagaatagagaaa 957728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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