View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_12 (Length: 546)
Name: NF18417_low_12
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 501
Target Start/End: Complemental strand, 38942659 - 38942174
Alignment:
| Q |
20 |
ttatatttattttttattcttttgggttttgttgggtatcattcatctcacatgttatttctatttggccnnnnnnnnngttgcagaggagtttcatgtc |
119 |
Q |
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| T |
38942659 |
ttatatttattttttatttttttgggttttgttaggtatcattcatctcacatgttatttctatttggc-attttttttgttgcagaggagtttcatgtt |
38942561 |
T |
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| Q |
120 |
gagcctatttgtccacaccagatttgttttgcttaaatatcattcactttcacgatttttgtcctgaacaaaggtataggcaatgagaaacaaacaactg |
219 |
Q |
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| T |
38942560 |
gagcctatttgtccacaccagatttgttttgcttaataatcattcactttcacgattgttgtcctgaacaaaggtatgggcaatgagaaacaaacaactg |
38942461 |
T |
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| Q |
220 |
cattcatactacattcttatgagtaaagccacaattgatgttcaataatgagaaacatgtttagttgacaatgcaggacatctat-----aatattatgc |
314 |
Q |
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| T |
38942460 |
cattcatactacattcttatgagtatagccacaattgatattcaataaagagaaacatgtttagttgacaatgcaagacatctattggacgatattatgc |
38942361 |
T |
|
| Q |
315 |
ttttggttattttgttctatttcattgctttttgcatttctgtgattgtgaattggtttgtaattaaaatagcttctatacttgcagcttcttttacaag |
414 |
Q |
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| T |
38942360 |
ttttggttattttgttttatttcatttcttcttgcatttcagtgattgtgaattggtttgtaattaaaatagcttctatacttgcagcctagtttacaat |
38942261 |
T |
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| Q |
415 |
caatggtcaactacactcggcaaattataatgtattttgagcaccatcatcattatcatatatcaggcggtgtttgtttcccagctt |
501 |
Q |
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| T |
38942260 |
caatggtcaaccacactctacaagttataatgtattttgagcaccatcatcattatcatatatcagacagtgtttgttttccagctt |
38942174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 530
Target Start/End: Complemental strand, 38942173 - 38942126
Alignment:
| Q |
483 |
ggtgtttgtttcccagcttaagattttcagtgaaaagtacaaaggtat |
530 |
Q |
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| T |
38942173 |
ggtgtttgtttcccagcttaggattttcagtaaaaagtacaaaggtat |
38942126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 21990170 - 21990114
Alignment:
| Q |
99 |
gttgcagaggagtttcatgtcgagcctatttgtccacaccagatttgttttgcttaa |
155 |
Q |
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| T |
21990170 |
gttgcagaggagcttcatgtcaaacctatttgtccgcatcaggtttgttttgcttaa |
21990114 |
T |
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