View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_13 (Length: 535)
Name: NF18417_low_13
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 10 - 518
Target Start/End: Complemental strand, 36878761 - 36878253
Alignment:
| Q |
10 |
atgaattatgtgttcagagttccttggaacacctctacatgccttaacttccaacccttgcaatcccaaaacaaagcacaaacaactctatgttgtcaaa |
109 |
Q |
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| T |
36878761 |
atgaattacgtgttaagagttccttggaacacctctacatgccttaacttccaacccttgcaatcccaaaacaaagcacaaacaactctatgttgtcaaa |
36878662 |
T |
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| Q |
110 |
ctttgttgtctctttttggcatagcactagcaaaaaatctcaagaagaactctcttttccaactcccaaatctccctacctccacttcatgccttcaaga |
209 |
Q |
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| T |
36878661 |
ctttgttgtctctttttggcatagcactagcaaaaaatctcaagaagaactctcttttccaactcccaaatctccctacctccacttcatgccttcaaga |
36878562 |
T |
|
| Q |
210 |
cttccaaactaagctcagttccctttcacttaacaatgaccttgtgtcttcatgctttgatccacttcagtttgttatcactcctaacatatgcgctcgt |
309 |
Q |
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| T |
36878561 |
cttccaaactaagctcagttccctttcacttaacaatgaccttgtgtcttcatgctttgatccacttcagtttgttatcactcctaacatatgcgctcgt |
36878462 |
T |
|
| Q |
310 |
gttcaatctaagcaagattggatcagcagggttggtcctgcaccattgttcaacacttcttgtaaaccggaccttagtgtttctaccaattgtgatgcat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36878461 |
gttcaatctaagcaagattggatcagcagggttggtcctgcaccattgttcaacacttcttgtaaaccagaccttagtgtttctaccaattgtgatgcat |
36878362 |
T |
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| Q |
410 |
gtgttaaccagggactaaaggttcaagagaagctgaatcaaattgatgataatagttcacattccaaagattgcttttacttcaccatcatttatattgt |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36878361 |
gtgttaaccagggactaaaggttcaagagaagctgaatcaaattgatggtaatagttcacattccaaagattgcttttacttcaccatcatttatattgt |
36878262 |
T |
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| Q |
510 |
tggagttgt |
518 |
Q |
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| T |
36878261 |
tggagttgt |
36878253 |
T |
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