View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18417_low_15 (Length: 492)

Name: NF18417_low_15
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18417_low_15
NF18417_low_15
[»] chr5 (3 HSPs)
chr5 (88-470)||(40948000-40948372)
chr5 (88-188)||(40949481-40949581)
chr5 (5-90)||(40947185-40947268)
[»] chr8 (3 HSPs)
chr8 (88-470)||(26956729-26957101)
chr8 (88-188)||(26958210-26958310)
chr8 (5-90)||(26955915-26955998)
[»] chr4 (1 HSPs)
chr4 (282-470)||(2237052-2237243)
[»] chr7 (2 HSPs)
chr7 (5-90)||(34314987-34315072)
chr7 (5-53)||(11201137-11201185)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 88 - 470
Target Start/End: Original strand, 40948000 - 40948372
Alignment:
Q  88 tataatcctttgatgaactttaacctataatttgatttttctatcaaatatttgaaactcatttctagagtaatatggaaatagtctttggaggtatttt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40948000 tataatcctttgatgaactttaacctataatttgatttttctatcaaatatttgaaactcatttctagagtaatatggaaatagtctttggaggtatttt 40948099  T
Q  188 agatacatcagatgagttaattcatgtttttggaatttctaactaggannnnnnnnnnctttctgtcatgtggtggtcgtatatacattttttattatac 287  Q
    |||||||        ||||||||||||||||| |||||||||| ||||          |||||||||||||||||||||||||||||||| |||||||||    
T  40948100 agataca--------gttaattcatgtttttgaaatttctaaccaggattgtttt---ctttctgtcatgtggtggtcgtatatacatttgttattatac 40948188  T
Q  288 actatcctaaattactctatccactaatgctgctaatttggtttgtgcagttaaagagttgttttggttttgacacatttttcactacggatgttcgtag 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40948189 actatcctaaattactctatccactaatgctgctaatttggtttgtgcagttaaagagttgttttggttttgacacatttttcactacgaatgttcgtag 40948288  T
Q  388 gtttggt-acggaggcatttttattgggaatttaaggagaccaattgatgaagtcattccaaagttagagaagaaactctctga 470  Q
     |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40948289 atttggtgacggaggcattttcattgggaatttaaggagaccaattgatgaagtcattccaaagttggagaagaaactctctga 40948372  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 40949481 - 40949581
Alignment:
Q  88 tataatcctttgatgaactttaacctataatttgatttttctatcaaatatttgaaactcatttctagagtaatatggaaatagtctttggaggtatttt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40949481 tataatcctttgatgaactttaacctataatttgatttttctatcaaatatttgaaactcatttctagagtaatatggaaatagtctttggaggtatttt 40949580  T
Q  188 a 188  Q
    |    
T  40949581 a 40949581  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 40947185 - 40947268
Alignment:
Q  5 tctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaactcgccgatgaagctctcttctatggtat 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  40947185 tctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaact--ccgataaagctctcttctatggtat 40947268  T

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Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 88 - 470
Target Start/End: Original strand, 26956729 - 26957101
Alignment:
Q  88 tataatcctttgatgaactttaacctataatttgatttttctatcaaatatttgaaactcatttctagagtaatatggaaatagtctttggaggtatttt 187  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26956729 tataatcctttgataaactttaacctataatttgatttttctatcaaatatttgaaactcatttctagagtaatatggaaatagtctttggaggtatttt 26956828  T
Q  188 agatacatcagatgagttaattcatgtttttggaatttctaactaggannnnnnnnnnctttctgtcatgtggtggtcgtatatacattttttattatac 287  Q
    |||||||        ||||||||||||||||| |||||||||| ||||          |||||||||||||||||||||||||||||||| |||||||||    
T  26956829 agataca--------gttaattcatgtttttgaaatttctaaccaggattgtttt---ctttctgtcatgtggtggtcgtatatacatttgttattatac 26956917  T
Q  288 actatcctaaattactctatccactaatgctgctaatttggtttgtgcagttaaagagttgttttggttttgacacatttttcactacggatgttcgtag 387  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26956918 actatcctaaattactctatccgctaatgctgctaatttggtttgtgcagttaaagagttgttttggttttgacacatttttcactacggatgttcgtag 26957017  T
Q  388 gtttggt-acggaggcatttttattgggaatttaaggagaccaattgatgaagtcattccaaagttagagaagaaactctctga 470  Q
     |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26957018 atttggtgatggaggcattttcattgggaatttaaggagaccaattgatgaagtcattccaaagttggagaagaaactctctga 26957101  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 26958210 - 26958310
Alignment:
Q  88 tataatcctttgatgaactttaacctataatttgatttttctatcaaatatttgaaactcatttctagagtaatatggaaatagtctttggaggtatttt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26958210 tataatcctttgatgaactttaacctataatttgatttttctatcaaatatttgaaactcatttctagagtaatatggaaatagtctttggaggtatttt 26958309  T
Q  188 a 188  Q
    |    
T  26958310 a 26958310  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 26955915 - 26955998
Alignment:
Q  5 tctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaactcgccgatgaagctctcttctatggtat 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  26955915 tctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaact--ccgataaagctctcttctatggtat 26955998  T

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Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 282 - 470
Target Start/End: Original strand, 2237052 - 2237243
Alignment:
Q  282 ttatacactatcctaaattactctat--ccactaatgctgctaatttggtttgtgcagttaaagagttgttttggttttgacacatttttcactacggat 379  Q
    |||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2237052 ttatacactatcctaatttactctatatccactaatgctgctaatttggtttgtgcagttaaagagttgttttggttttgacacatttttcacaacggat 2237151  T
Q  380 gttcgtaggtttgg-tacggaggcatttttattgggaatttaaggagaccaattgatgaagtcattccaaagttagagaagaaactctctga 470  Q
    ||||| || |||||  ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2237152 gttcgaagatttggcgacggaggtattttcattgggaatttaaggagaccaattgatgaagtcattccaaagttagagaagaaactctctga 2237243  T

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Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 34314987 - 34315072
Alignment:
Q  5 tctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaactcgccgatgaagctctcttctatggtat 90  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34314987 tctctcctccgcaccaaccaccttccctccactgcccgccgcttctccaaacaagaactcgccgacgaagctctcttctatggtat 34315072  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 11201137 - 11201185
Alignment:
Q  5 tctctcctccgcgccaaccacctcccctccactgcccgccgcttctcca 53  Q
    |||||||||| | ||||||||||||||||||  | ||||||||||||||    
T  11201137 tctctcctccacaccaaccacctcccctccatcgtccgccgcttctcca 11201185  T

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