View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_16 (Length: 473)
Name: NF18417_low_16
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 2571693 - 2572069
Alignment:
| Q |
16 |
atattatatatatttataattttcaaagttcaatataaaattaactattactttgtaagtaatacagttaactatttaggatttaattcatatacatcga |
115 |
Q |
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| T |
2571693 |
atattatatatatttatcattttcaaagttcaatataaaattaactattactttgtaagtaatacaattaactatttaggatttaattcatatacattga |
2571792 |
T |
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| Q |
116 |
cattgtaaatgtttttcaaactgccggttgatcaaaactattggatcgcaatggagatttggctttggctggctttagctatgtattgtttacgtaaaag |
215 |
Q |
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| T |
2571793 |
cattgtaaatatttttcaaactgctggttgatcaaaactattggatcgcaatagaaatttggctttggctggctttagctatgtattgtttacgtaaaag |
2571892 |
T |
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| Q |
216 |
gtcatacaagtgtgaattgtgatttattgaaagtatcaaaattaatctcaactacttattgcactcaggaaaatatgaaggaattatggagaaaacgaca |
315 |
Q |
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| T |
2571893 |
gtcatacaagtgtgaattgtgatttattgaaagtatcaaaattaatctcaactacttattgcactcaggaaaatatgaaggaattatggagaaaacgaca |
2571992 |
T |
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| Q |
316 |
aatacttgtataaaaaatataaatttgttagttttgaattccttaaaagttaaaacaacaactacaggatccatcaa |
392 |
Q |
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| T |
2571993 |
aatacttgtataaaaaatataaatttgttagttttgaattccttaaaagttaaaacaacaactacaggatccatcaa |
2572069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 2572067 - 2572107
Alignment:
| Q |
419 |
caacacttttctgaataaaaagttgatattcatagaaaaag |
459 |
Q |
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| T |
2572067 |
caacacttttctgaataaaaagttgatattcatagaaaaag |
2572107 |
T |
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