View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_19 (Length: 454)
Name: NF18417_low_19
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_19 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 38725073 - 38724860
Alignment:
| Q |
1 |
ttcaataaatgggttaagtacaaatgtgcaaccatctggttcatcaatggcagtgcttacatcctccggtataatggatgagaattccttcgcagagcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725073 |
ttcaataaatgggttaagtacaaatgtgcaaccatctggttcatcaatggcagtacttacatcctccggtataatggatgagaattccttcgcagagcca |
38724974 |
T |
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| Q |
101 |
atgaagatttcgccccaacgaacttcacttgcaaatgcaagcaaggacatgaatgttgcacttcctccttattcagttgcatcgatcgatctattaattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
38724973 |
atgaagatttcgccccaacgaacttcacttgcaaatgcaagcaaggacatgtatgttgcacttcatccttattcagttgcatcgattgatctattaattt |
38724874 |
T |
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| Q |
201 |
gaaatgctatggtg |
214 |
Q |
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|||||||||||||| |
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| T |
38724873 |
gaaatgctatggtg |
38724860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 38724748 - 38724687
Alignment:
| Q |
378 |
caaaaagatttacatttactaagagatgtaaatggatatcatggatgctaatagtatgacat |
439 |
Q |
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| T |
38724748 |
caaaaatatttacatttactcacggatgtaaatggatatcatggatgcagatagtatgacat |
38724687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 32675 - 32746
Alignment:
| Q |
112 |
gccccaacgaacttcacttgcaaatgcaagcaaggacatgaatgttgcacttcctccttattcagttgcatc |
183 |
Q |
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| T |
32675 |
gccccaaagaactgcacttggaaatgcaagcaatgacatggatgttagacttcctccttattcagttacatc |
32746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 32335 - 32435
Alignment:
| Q |
1 |
ttcaataaatgggttaagtacaaatgtgcaaccatctggttcatcaatggcagtgcttacatcctccggtataatggatgagaattccttcgcagagcca |
100 |
Q |
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|||||||||||| |||| | ||| ||| ||| | ||| ||||||||||| |||||||| |||||| || ||||||||||||||||||| | |||||| |
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| T |
32335 |
ttcaataaatggtttaaattcaattgttcaatcgtctaattcatcaatggtggtgcttacgtcctccaatagaatggatgagaattccttctcggagcca |
32434 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
32435 |
a |
32435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 34165854 - 34165925
Alignment:
| Q |
112 |
gccccaacgaacttcacttgcaaatgcaagcaaggacatgaatgttgcacttcctccttattcagttgcatc |
183 |
Q |
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| T |
34165854 |
gccccaaagaactgcacttggaaatgcaagcaatgacatggatgttagacttcctccttattcagttacatc |
34165925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 34215948 - 34216019
Alignment:
| Q |
112 |
gccccaacgaacttcacttgcaaatgcaagcaaggacatgaatgttgcacttcctccttattcagttgcatc |
183 |
Q |
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| T |
34215948 |
gccccaaagaactgcacttggaaatgcaagcaatgacatggatgttagacttcctccttattcagttacatc |
34216019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 34165514 - 34165614
Alignment:
| Q |
1 |
ttcaataaatgggttaagtacaaatgtgcaaccatctggttcatcaatggcagtgcttacatcctccggtataatggatgagaattccttcgcagagcca |
100 |
Q |
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|||||||||||| |||| | ||| ||| ||| | ||| ||||||||||| |||||||| |||||| || ||||||||||||||||||| | |||||| |
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| T |
34165514 |
ttcaataaatggtttaaattcaattgttcaatcgtctaattcatcaatggtggtgcttacgtcctccaatagaatggatgagaattccttctcggagcca |
34165613 |
T |
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| Q |
101 |
a |
101 |
Q |
| |
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| T |
34165614 |
a |
34165614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 34172011 - 34172111
Alignment:
| Q |
1 |
ttcaataaatgggttaagtacaaatgtgcaaccatctggttcatcaatggcagtgcttacatcctccggtataatggatgagaattccttcgcagagcca |
100 |
Q |
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|||||||||||| |||| | ||| ||| ||| | ||| ||||||||||| || ||||| |||||| || ||||||||||||||||||| | |||||| |
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| T |
34172011 |
ttcaataaatggtttaaattcaattgttcaatcgtctaattcatcaatggtggtacttacgtcctccaatagaatggatgagaattccttctcggagcca |
34172110 |
T |
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| Q |
101 |
a |
101 |
Q |
| |
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| T |
34172111 |
a |
34172111 |
T |
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