View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_23 (Length: 440)
Name: NF18417_low_23
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_23 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 429
Target Start/End: Original strand, 46166516 - 46166931
Alignment:
| Q |
14 |
catatagtattgcaaatctccctccgccctacccttgcatttggcccaaacgtgtgttaggccaaactgtttgttatgggggcgacaaccccgcggtact |
113 |
Q |
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| T |
46166516 |
catatagtattgcaaatatccctccgccctacccttgcatttggcccaaacgtgtgttaggccaaactgtttgttgtgggggcgacaaccccgcagtact |
46166615 |
T |
|
| Q |
114 |
gtttaggagtattcttgtaatttgaaccgtaatattatatatgtcttgtaacgctctaaaccctaattcatttaagtaatatagaaaagtatagatgctc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46166616 |
gtttaggagtattcttgtaatttgaaccgtaatattatatatgtcttgtaacgctataaaccctaattcatttaagtaatatagaaaagtatagatgctc |
46166715 |
T |
|
| Q |
214 |
tatggtcggagaggtaggcacaatttgcctaactacataaacaaacgatcatgctccattgttgcaagttgcgttttcttgaatcttctgttactagttg |
313 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46166716 |
tatggtcggagaggtaggcacaattggcctaactacataaacaaacgatcatgctccattgttgcaagttacgttttcttgaatcttctgttactagttg |
46166815 |
T |
|
| Q |
314 |
ttaaagaatattagtctttaatttaatcatcaacaatttatattactcactttacatttgttgttcactttagaagagttagatnnnnnnnttgaacctc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46166816 |
ttaaagaatattagtctttaatttaatcatcaacaatttatattactcactttacatttgttgttcactttagaagagttagataaaaaaattgaacctc |
46166915 |
T |
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| Q |
414 |
ttaactagtttcatgt |
429 |
Q |
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| T |
46166916 |
ttaactagtttcatgt |
46166931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 151 - 394
Target Start/End: Original strand, 46159791 - 46160036
Alignment:
| Q |
151 |
tatatgtcttgtaacgctctaaaccctaattcatttaagtaa-tatagaaaagtatagatgctctatggtcggagaggtaggcacaatttgcctaactac |
249 |
Q |
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| T |
46159791 |
tatatgtcttgtaacactgtaaaccctaatacatttaaataaatatacaaaattatagatgctctatagtcgcagtggtaggtacaattggcctaactgc |
46159890 |
T |
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| Q |
250 |
ataaacaaacgatcatgctccattgttg-caagttgcgttttcttgaatcttctgttactagttgttaaagaatattagtctttaatttaatcatcaaca |
348 |
Q |
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| T |
46159891 |
gtaaacaaacgatcgtgctccattattttcaatttgcgttttctttaatcatttgttactagttgttaacgaatattagtgtttaatttaatcatcaaca |
46159990 |
T |
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| Q |
349 |
atttatattactcactttacatttgttgttcactttagaagagtta |
394 |
Q |
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| T |
46159991 |
atttatattactcactttacatttgttgttcactttagaagagtta |
46160036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 46159629 - 46159751
Alignment:
| Q |
24 |
tgcaaatctccctccgccc-tacccttgcatttggcccaaacgtgtgttaggccaaactgtttgttatgggggcgacaa-ccccgcggtactgtttagga |
121 |
Q |
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| T |
46159629 |
tgcaaatctccctctgcccctggccttgcatttggcccaaacgtgcgatatgc-aaactgtttgttacgggggcgacaacccccgcagtactgctccaga |
46159727 |
T |
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| Q |
122 |
gtattcttgtaatttgaaccgtaa |
145 |
Q |
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| T |
46159728 |
gtattgttgtaatccgaaccgtaa |
46159751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 21399875 - 21399838
Alignment:
| Q |
47 |
cttgcatttggcccaaacgtgtgttaggccaaactgtt |
84 |
Q |
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| T |
21399875 |
cttgcatttggcccaaacgtgtgttaggccaaactgtt |
21399838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 189 - 276
Target Start/End: Complemental strand, 4920208 - 4920121
Alignment:
| Q |
189 |
gtaatatagaaaagtatagatgctctatggtcggagaggtaggcacaatttgcctaactacataaacaaacgatcatgctccattgtt |
276 |
Q |
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|||||||| |||||||||| |||||||| |||| ||||||||||| |||| || |||| ||||||||| |||||||||| ||||||| |
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| T |
4920208 |
gtaatatacaaaagtatagctgctctatagtcgtagaggtaggcataattgaccgaactgcataaacaaccgatcatgcttcattgtt |
4920121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 266
Target Start/End: Original strand, 27905875 - 27906018
Alignment:
| Q |
123 |
tattcttgtaatttgaaccgtaatattatatatgtcttgtaacgctctaaaccctaattcatttaagtaatatagaaaagtatagatgctctatggtcgg |
222 |
Q |
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|||| |||||||||| ||| ||||| |||||||| ||||||| || || | ||||||||| | ||||||| || |||| ||||| |||||||| ||| |
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| T |
27905875 |
tattattgtaatttggaccataatactatatatgacttgtaagactgtacatcctaattcactcaagtaatgtacaaaattatagctgctctatagtcac |
27905974 |
T |
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| Q |
223 |
agaggtaggcacaatttgcctaactacataaacaaacgatcatg |
266 |
Q |
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| T |
27905975 |
ataggtagacacaattgaccgaattacctaaacaaacgatcatg |
27906018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 5948804 - 5948753
Alignment:
| Q |
225 |
aggtaggcacaatttgcctaactacataaacaaacgatcatgctccattgtt |
276 |
Q |
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|||||||||||||| | | ||||||||||||||||||||||| || |||||| |
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| T |
5948804 |
aggtaggcacaattggtcgaactacataaacaaacgatcatgttcaattgtt |
5948753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 38833566 - 38833505
Alignment:
| Q |
253 |
aacaaacgatcatgctccattgtt-gcaagttgcgttttcttgaatcttctgttactagttg |
313 |
Q |
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| T |
38833566 |
aacaaacaatcatgttccattgtttgcaatttgtgttttctttaatcttttgttactagttg |
38833505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 3203 - 3249
Alignment:
| Q |
31 |
ctccctccgccc-tacccttgcatttggcccaaacgtgtgttaggcc |
76 |
Q |
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| T |
3203 |
ctccctccgcccctacccttgcgtttgacccaaacgtgtgttaggcc |
3249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 13951063 - 13951109
Alignment:
| Q |
31 |
ctccctccgccc-tacccttgcatttggcccaaacgtgtgttaggcc |
76 |
Q |
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| T |
13951063 |
ctccctccgcccctacccttgcgtttgacccaaacgtgtgttaggcc |
13951109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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