View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_24 (Length: 432)
Name: NF18417_low_24
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Complemental strand, 11150356 - 11149954
Alignment:
| Q |
13 |
ctgtgtttgataatccttgtttgcatgccagagtttctatgattcagagagagacccactcactctcccc-ttatggctatgctatcttatttgtcggac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
11150356 |
ctgtgtttgataatccttgtttgcatgccagagtttctatgattcagaga----cccactcactctccccattatggccatgctatcttacttgtcggac |
11150261 |
T |
|
| Q |
112 |
tgagaccaatgagtcagtgatttctcagaccaaagtacatgactcaatatgacagaatgattactgagatttctcttttatgcattatgaaatatcgaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11150260 |
tgagaccaatgagtcagtgatttctcagaccaaagtacatgactcaatatgacagaatgattactgagatttctcttttatgcattatgaaatatcgaca |
11150161 |
T |
|
| Q |
212 |
cttctcagattaggcgtatttcggtatcagacatgtgttctgtccgacactgatacggcgctgacacat--atatttacattgaattatgccaccttttc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||| |
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| T |
11150160 |
cttctcagattaggcgtatttcggtatcagacatgtgttctgtccgacactgatacgacactgacacatatatatttacattgaattatgcgaccttttc |
11150061 |
T |
|
| Q |
310 |
aaaatattagcgggttggtgtattagtgtacatatcgtatctggtgtctgtatccatatccatgcttctggagctagctagcttttagtatatgttggtc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11150060 |
aaaatattagcgggttggtgtattagtgtacatatcgtatctgatgtctctatccatatccatgcttctggagctagctagcttttagtatatgttggtc |
11149961 |
T |
|
| Q |
410 |
aaataaa |
416 |
Q |
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||||||| |
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| T |
11149960 |
aaataaa |
11149954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 11173329 - 11173456
Alignment:
| Q |
55 |
ttcagagagagacccactcactctccccttatggctatgctatcttatttgtcggactgagaccaatgagtcagtgatttctcagaccaaagtacatgac |
154 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11173329 |
ttcagagagagacccactcactcgggccttatggctatgttatcttacttgtctgactgagaccaatgagtcagtgatttttcagaccaaagtacatgat |
11173428 |
T |
|
| Q |
155 |
tcaatatgacagaatgattactgagatt |
182 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
11173429 |
gcaatatgatagaatgattactgagatt |
11173456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 29655927 - 29655975
Alignment:
| Q |
216 |
tcagattaggcgtatttcggtatcagacatgtgttctgtccgacactga |
264 |
Q |
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| T |
29655927 |
tcagattaggcgtgtttcggtgtcagatatgtgttgtgtccgacactga |
29655975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 28524544 - 28524491
Alignment:
| Q |
208 |
gacacttctcagattaggcgtatttcggtatcagacatgtgttctgtccgacac |
261 |
Q |
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||||||||||||||||||||| |||| || ||||||| ||||| |||||||||| |
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|
| T |
28524544 |
gacacttctcagattaggcgtgtttctgtgtcagacacgtgttgtgtccgacac |
28524491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 35056986 - 35056896
Alignment:
| Q |
208 |
gacacttctcagattaggcgtatttcggtatcagacatgtgttctgtccgacactgatacggcgctgacacatatatttacattgaattat |
298 |
Q |
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|||||| |||||||||||||| |||| || || |||| |||| |||||||||| || ||| | | |||||||||| ||||| |||||||| |
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| T |
35056986 |
gacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat |
35056896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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