View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18417_low_26 (Length: 415)

Name: NF18417_low_26
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18417_low_26
NF18417_low_26
[»] chr6 (24 HSPs)
chr6 (17-392)||(2974464-2974828)
chr6 (17-393)||(2983323-2983699)
chr6 (23-392)||(2929772-2930138)
chr6 (21-391)||(2935060-2935429)
chr6 (21-344)||(2996667-2996990)
chr6 (22-297)||(2937922-2938197)
chr6 (144-393)||(2965111-2965365)
chr6 (21-269)||(2927621-2927869)
chr6 (21-252)||(3003174-3003401)
chr6 (227-392)||(2954749-2954911)
chr6 (24-252)||(2952400-2952624)
chr6 (21-296)||(2658309-2658602)
chr6 (295-393)||(2658188-2658285)
chr6 (313-393)||(2927873-2927953)
chr6 (264-391)||(2952660-2952778)
chr6 (57-131)||(2979376-2979450)
chr6 (286-393)||(2986474-2986576)
chr6 (249-299)||(2986421-2986471)
chr6 (267-392)||(3003016-3003135)
chr6 (83-140)||(2954664-2954721)
chr6 (21-121)||(2964970-2965070)
chr6 (355-391)||(2979767-2979803)
chr6 (290-360)||(2979527-2979601)
chr6 (312-393)||(2938197-2938272)
[»] scaffold0024 (2 HSPs)
scaffold0024 (21-348)||(34533-34859)
scaffold0024 (301-392)||(43599-43688)
[»] chr7 (1 HSPs)
chr7 (22-348)||(3339487-3339815)
[»] chr3 (3 HSPs)
chr3 (112-251)||(49618963-49619102)
chr3 (113-393)||(49613989-49614268)
chr3 (271-345)||(49619136-49619207)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 2974464 - 2974828
Alignment:
Q  17 ctatcttgtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatcc 116  Q
    ||||||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||    
T  2974464 ctatcttatttaatggtcttggagaaaatattacaaattctaatatcagttctcatttctctattctttgcaaagaattgaatgcttattgtaggaatcc 2974563  T
Q  117 ttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcactata 216  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||    
T  2974564 ttggcataggttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatttttctacttgttctcactata 2974663  T
Q  217 attcaaactgtttgttctgtcttgcaagtagtacaagcatcctagtcatttctttcattgttgagttcataattattgttattcttattatcaccaatgt 316  Q
    |||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| ||||      ||||||    
T  2974664 attcaaagagtttgttctgtcttgcaagtagtacaagcatcctagtgatttctttcattgttgagttcataattattttcattattat------caatgt 2974757  T
Q  317 atgttgtttgtttcaatggtttcattatctttcgtgtgttgtgtacttagattgaaattgtaatttcatataaata 392  Q
    | ||||||||||||||| ||||||||||||||  |||||||     ||||||||||||| ||||||||||||||||    
T  2974758 acgttgtttgtttcaat-gtttcattatcttt-ttgtgttg---cattagattgaaattataatttcatataaata 2974828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 2983323 - 2983699
Alignment:
Q  17 ctatcttgtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatcc 116  Q
    |||||||||||||||||||| | |||||| || |||| | |||  |||||| |||||||   | | ||| ||| || ||  |||||| |||||  |||||    
T  2983323 ctatcttgtttaatggtctttgcaaaaatgttgtaaaatctaaactcagttatcatttcgtaagtctttccaatgaattggatgctttttgtaataatcc 2983422  T
Q  117 ttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcactata 216  Q
    | || |||||||||||||  |||| |||||||||||| |||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||||||    
T  2983423 taggaataagttgaaggccactctcaggcgtgattatggcaatactccttggaaaattgctgcttccgttgctggagtcttactacttgttctcactata 2983522  T
Q  217 attcaaactgtttgttctgtcttgcaagtagtacaagcatcctagtcatttctttcattgttgagttcataattattgttattcttattatcaccaatgt 316  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  2983523 attcaaacagtttgttctgtcttgcaaatagtacaagcatcctagtcatttctttcattgttgagttcataattattgttattctcattatcacccatgt 2983622  T
Q  317 atgttgtttgtttcaatggtttcattatctttcgtgtgttgtgtacttagattgaaattgtaatttcatataaataa 393  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2983623 acgttgtttgtttcaatggtttcattatatttcgtgtgttgtgtacttagattgaaattgtaatttcatataaataa 2983699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 392
Target Start/End: Original strand, 2929772 - 2930138
Alignment:
Q  23 tgtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatccttggca 122  Q
    ||||||||||| || | ||| |||||||| ||| |||||||||| |||||||||||||| | ||||||||||||||||||| ||||  ||||||||||||    
T  2929772 tgtttaatggtttttgcaaatatattatacattctaatatcagtcctcatttctctattctatgcaaagacttaaatgctttttgttagaatccttggca 2929871  T
Q  123 taagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcactataattcaa 222  Q
    || |||||||||| |||| |||||||||||||| | |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| || |||||    
T  2929872 taggttgaaggctactctcaggcgtgattattgaagtactccttggcaaactgctgcttccattgctggattcttactactttttctcactttacttcaa 2929971  T
Q  223 actgtttgttctgtcttgcaagtagtacaagcatcctag--tcatttctttcattgttgagttcataattattgttattcttattatcaccaatgtatgt 320  Q
     | |||||||||||||||||||| |||||||| ||||||  | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2929972 tcagtttgttctgtcttgcaagttgtacaagcctcctagcttgatttcttttattgttgagttcataattattgttattcttattatcaccaatgtacgt 2930071  T
Q  321 tgtttgtttcaatggtttcattatctttcgtgtgttgtgtacttagattgaaattgtaatttcatataaata 392  Q
    |||||||||||||||||||||||  ||| |||||||||    ||||||  ||||||||||||||||||||||    
T  2930072 tgtttgtttcaatggtttcatta--ttttgtgtgttgt---attagatcaaaattgtaatttcatataaata 2930138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 391
Target Start/End: Original strand, 2935060 - 2935429
Alignment:
Q  21 cttgtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatccttgg 120  Q
    |||||||||||||||| | |||||| ||| | | | ||||||||||||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||    
T  2935060 cttgtttaatggtctttggaaaaatgttacacaatctaatatcagttctcatttctctattctatgcaaagacttaaatgctttttgtaagaatccttgg 2935159  T
Q  121 cataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcactataattc 220  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| || |||    
T  2935160 cataagttgaaggctactctcaggcgtgattattgcaaaactccttggcaaactgctgcttccattgctggaatcttactactttttctcactttacttc 2935259  T
Q  221 aaactgtttgttctgtcttgcaagtagt---acaagcatcctagtcatttctttcattgttgagttcataattattgttattcttattatcaccaatgta 317  Q
    || | |||||||||||||||||||| ||   |||||| ||||||| ||||||||||||||||||||||||||||||  ||||  ||||||   |||||||    
T  2935260 aatcagtttgttctgtcttgcaagttgtacaacaagcctcctagtgatttctttcattgttgagttcataattatttctattagtattattttcaatgta 2935359  T
Q  318 tgttgtttgtttcaatggtttcattatctttcgtgtgttgtgtacttagattgaaattgtaatttcatataaat 391  Q
     ||||||||||||||||||||||||||||||  |||||||     |||||||||||||||||||||||||||||    
T  2935360 cgttgtttgtttcaatggtttcattatcttt-ttgtgttg---cattagattgaaattgtaatttcatataaat 2935429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 344
Target Start/End: Complemental strand, 2996990 - 2996667
Alignment:
Q  21 cttgtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatccttgg 120  Q
    |||||||||||||||| | | |||| || || ||   |||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  2996990 cttgtttaatggtctttgcataaatgttgtacataccaatatcagttctcaattctctattctttgcaaggacttaaatgctttttgtaggaatccttgg 2996891  T
Q  121 cataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcactataattc 220  Q
    ||||||||||||||| |||| |||||||||||| |||| |||||||||||  ||||||||||| |||||||| |  ||||||||||||||||| | ||||    
T  2996890 cataagttgaaggctactctcaggcgtgattatggcaagactccttggcaagctgctgcttcctttgctggaattgtactacttgttctcacttttattc 2996791  T
Q  221 aaactgtttgttctgtcttgcaagtagtacaagcatcctagtcatttctttcattgttgagttcataattattgttattcttattatcaccaatgtatgt 320  Q
    || | |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| ||||  |||||||||||||||| ||    
T  2996790 aatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattatcaccaatgtaagt 2996691  T
Q  321 tgtttgtttcaatggtttcattat 344  Q
    ||||||||||||||||||||||||    
T  2996690 tgtttgtttcaatggtttcattat 2996667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 22 - 297
Target Start/End: Original strand, 2937922 - 2938197
Alignment:
Q  22 ttgtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatccttggc 121  Q
    ||||||||||||||| | |||||| || || ||| | ||||||||||||| ||||||||| |||||||||| ||||||||||  || || ||||||||||    
T  2937922 ttgtttaatggtctttgcaaaaatgttgtatattctgatatcagttctcaattctctattctttgcaaagaattaaatgctttctgcagtaatccttggc 2938021  T
Q  122 ataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcactataattca 221  Q
    |||||||||||||| |||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| || ||||    
T  2938022 ataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttccattgctggaatcttactacttattctcactttacttca 2938121  T
Q  222 aactgtttgttctgtcttgcaagtagtacaagcatcctagtcatttctttcattgttgagttcataattattgtta 297  Q
    | | |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  2938122 atcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcataattattgtta 2938197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 144 - 393
Target Start/End: Original strand, 2965111 - 2965365
Alignment:
Q  144 gcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcactataattcaaactgtttgttctgtcttgcaa 243  Q
    ||||||||| |||| ||||||||||||  ||||||||||| |||||||| |||||||||||||||||||| |||||||||| |||||||||    |||||    
T  2965111 gcgtgattactgcagtactccttggcaagctgctgcttcctttgctggaatcttactacttgttctcactttaattcaaacagtttgttct----tgcaa 2965206  T
Q  244 gtagtacaa---------gcatcctagtcatttctttcattgttgagttcataattattgttattcttattatcaccaatgtatgttgtttgtttcaatg 334  Q
    |||||||||         || ||||||| ||||||||||||||||||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||    
T  2965207 gtagtacaacaacctaatgcttcctagtgatttctttcattgttgagttcataattattgctattagtattatcaccaatgtacgttgtttgtttcaatg 2965306  T
Q  335 gtttcattatctttcgtgtgttgtgtacttagattgaaattgtaatttcatataaataa 393  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  2965307 gtttcattatcttttgtgtgttgtgtccttagattgaaattgtaatttcatataaataa 2965365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 21 - 269
Target Start/End: Original strand, 2927621 - 2927869
Alignment:
Q  21 cttgtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatccttgg 120  Q
    |||||||||||||||||| |||||| ||| |  || ||  ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||  |     
T  2927621 cttgtttaatggtcttggtaaaaatgttacacgttctacaatcagttctcaattctctattctttgcaaagacttaaatgcttattgtaagaatccacga 2927720  T
Q  121 cataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcactataattc 220  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| || |||    
T  2927721 cataagttgaaggctactctcaggcgtgattattgcaaaactccttggcaaactgctgcttccattgcgggaatcttactacttgttctcactttacttc 2927820  T
Q  221 aaactgtttgttctgtcttgcaagtagtacaagcatcctagtcatttct 269  Q
    || | |||||||||||||||||||| |||||||| ||||||| ||||||    
T  2927821 aatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttct 2927869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 3003401 - 3003174
Alignment:
Q  21 cttgtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatccttgg 120  Q
    |||||||||||||||||| ||| ||||||||  || ||  ||||||||||| ||||||||| || |||||||||||||||||||||||| |||||| |||    
T  3003401 cttgtttaatggtcttggcaaagatattatacgttctacaatcagttctcaattctctattcttggcaaagacttaaatgcttattgtaagaatccatgg 3003302  T
Q  121 cataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcactataattc 220  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||| |||| ||||||| || |||    
T  3003301 cataagttgaaggctactctcaggcgtgattattgcaaaactccctggcaaactgctgcttccattgctggaatcttactccttgctctcactttacttc 3003202  T
Q  221 aaactgtttgttctgtcttgcaagtagtacaa 252  Q
    |||| ||||||    |||||||||||||||||    
T  3003201 aaacagtttgt----tcttgcaagtagtacaa 3003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 227 - 392
Target Start/End: Original strand, 2954749 - 2954911
Alignment:
Q  227 tttgttctgtcttgcaagtagtacaagcatcctagtcatttctttcattgttgagttcataattattgttattcttattatcaccaatgtatgttgtttg 326  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||||| ||||  ||||||||||||||||  |||||||    
T  2954749 tttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcaatgttgagttcat-attattgctattagtattatcaccaatgtaacttgtttg 2954847  T
Q  327 tttcaatggtttcattatctttcgtgtgttgtgtacttagattgaaattgtaatttcatataaata 392  Q
    |||| ||||||||||||  ||| ||||||||||||||||||| || ||||||||||||||||||||    
T  2954848 tttctatggtttcatta--ttttgtgtgttgtgtacttagatcgatattgtaatttcatataaata 2954911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 252
Target Start/End: Original strand, 2952400 - 2952624
Alignment:
Q  24 gtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatccttggcat 123  Q
    |||||||||| || | |||||| || || ||| ||||||||||||||| ||||||||| || |||||||  ||||||| | |||||| ||||||||| ||    
T  2952400 gtttaatggtatttgcaaaaatgttgtatattctaatatcagttctcaattctctattattggcaaagaaataaatgcattttgtagtaatccttggaat 2952499  T
Q  124 aagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcactataattcaaa 223  Q
    |||||||| ||  |||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||| || |||| |||| ||||||| || ||||||    
T  2952500 aagttgaaagccactctgaggcgtgattatggcaaaactccttggcaaactgctgcttccattgctggaatcgtactccttgctctcactttacttcaaa 2952599  T
Q  224 ctgtttgttctgtcttgcaagtagtacaa 252  Q
    | ||||||    |||||||||||||||||    
T  2952600 cagtttgt----tcttgcaagtagtacaa 2952624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 296
Target Start/End: Complemental strand, 2658602 - 2658309
Alignment:
Q  21 cttgtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatccttgg 120  Q
    |||||||| ||||||| | |||||| |||   ||||||||| |||| |||||||| ||||| ||||  |||||||||| | || ||||||||||||||||    
T  2658602 cttgtttactggtctttgcaaaaatgttactcattgtaatagcagtcctcatttcactattctttgtgaagacttaaaagatttttgtaggaatccttgg 2658503  T
Q  121 cataagttgaag------------gctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttc 208  Q
    | |||||| |||            |   |||| |||||||||||||||| |||||||||| |  ||| ||||||| |||||||| ||||||||||| |||    
T  2658502 cctaagtttaagtactcattgattggcactctgaggcgtgattattgcagtactccttggaaagctggtgcttcctttgctggaatcttactacttattc 2658403  T
Q  209 tcactataattcaaactgtttgttctgtcttgcaagtagtacaa------gcatcctagtcatttctttcattgttgagttcataattattgtt 296  Q
    |||||||||||||||| |||||||||||||| ||||||||||||      |  ||||||| |||||||||||||||  ||||||||||||||||    
T  2658402 tcactataattcaaacagtttgttctgtctttcaagtagtacaacctaatggctcctagtgatttctttcattgttcggttcataattattgtt 2658309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 2658285 - 2658188
Alignment:
Q  295 ttattcttattatcaccaatgtatgttgtttgtttcaatggtttcattatctttcgtgtgttgtgtacttagattgaaattgtaatttcatataaataa 393  Q
    ||||| |||||||| |||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  2658285 ttattgttattatcgccaatgtacgttgtttgtttcaatg-tttcattatcttttgtgtgttgtgtacttatattgaaattgtaatttcatataaataa 2658188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 313 - 393
Target Start/End: Original strand, 2927873 - 2927953
Alignment:
Q  313 atgtatgttgtttgtttcaatggtttcattatctttcgtgtgttgtgtacttagattgaaattgtaatttcatataaataa 393  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  2927873 atgtatgttgtttgttccaatggtttcattatcttttgtgtgttgtgtacttagattgaaattataatttcatataaataa 2927953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 391
Target Start/End: Original strand, 2952660 - 2952778
Alignment:
Q  264 atttctttcattgttgagttcataattattgttattcttattatcaccaatgtatgttgtttgtttcaatggtttcatt-atctttcgtgtgttgtgtac 362  Q
    |||||||||||||||||||||||||||||| ||||| ||||      ||||||| |||||||||||||||||||||||| |||| |  |||||||         
T  2952660 atttctttcattgttgagttcataattattattattattat------caatgtacgttgtttgtttcaatggtttcattaatctct-ttgtgttg---ca 2952749  T
Q  363 ttagattgaaattgtaatttcatataaat 391  Q
    |||||||||||||||||||||||||||||    
T  2952750 ttagattgaaattgtaatttcatataaat 2952778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 2979376 - 2979450
Alignment:
Q  57 taatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatccttggcataagttgaa 131  Q
    ||||||||||||||||||||||||| |||||||||| ||||||| || || ||| |||||||||||| |||||||    
T  2979376 taatatcagttctcatttctctattctttgcaaagatttaaatgatttttatagtaatccttggcatgagttgaa 2979450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 393
Target Start/End: Original strand, 2986474 - 2986576
Alignment:
Q  286 taattattgttattcttattatcaccaatgtatgttgtttgtttcaatggtttcattatctttcgtgtgttgtgtacttagattgaaattgtaatttcat 385  Q
    |||||||| ||||| ||||||||||||| |||  ||||||||||||||||||||||||   || ||||||| ||   |||||| ||||||||||||||||    
T  2986474 taattattattattattattatcaccaacgtacattgtttgtttcaatggtttcatta--gtttgtgtgttttg---ttagatcgaaattgtaatttcat 2986568  T
Q  386 ataaataa 393  Q
    ||||||||    
T  2986569 ataaataa 2986576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 2986421 - 2986471
Alignment:
Q  249 acaagcatcctagtcatttctttcattgttgagttcataattattgttatt 299  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  2986421 acaagcctcctagtgatttctttcattgttgagttcataattattgttatt 2986471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 3003135 - 3003016
Alignment:
Q  267 tctttcattgttgagttcataattattgttattcttattatcaccaatgtatgttgtttgtttcaat-ggtttcattatctttcgtgtgttgtgtactta 365  Q
    |||||||||||| ||||||||||||   ||||| ||||||||| ||||||| || ||||||||||||  ||||||||||||||  |||||||     | |    
T  3003135 tctttcattgttaagttcataatta---ttattattattatcatcaatgtacgtagtttgtttcaatatgtttcattatcttt-ttgtgttg---catca 3003043  T
Q  366 gattgaaattgtaatttcatataaata 392  Q
    |||||||||||||||||||||||||||    
T  3003042 gattgaaattgtaatttcatataaata 3003016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 2954664 - 2954721
Alignment:
Q  83 tttgcaaagacttaaatgcttattgtaggaatccttggcataagttgaaggctgctct 140  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  2954664 tttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactct 2954721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 2964970 - 2965070
Alignment:
Q  21 cttgtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatccttgg 120  Q
    ||||||||||||||||   ||| || ||||| ||| ||||||||||  ||| ||||||||| |||||||||| || ||||||| |||| |||||||||||    
T  2964970 cttgtttaatggtctttccaaatatgttatacattctaatatcagtcttcaattctctattctttgcaaagatttgaatgctttttgtgggaatccttgg 2965069  T
Q  121 c 121  Q
    |    
T  2965070 c 2965070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 2979767 - 2979803
Alignment:
Q  355 ttgtgtacttagattgaaattgtaatttcatataaat 391  Q
    ||||||||||||||||||||||||| |||||||||||    
T  2979767 ttgtgtacttagattgaaattgtaagttcatataaat 2979803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 2979527 - 2979601
Alignment:
Q  290 tattgttattcttattatcaccaatgtatgttgtttgtttcaatg----gtttcattatctttcgtgtgttgtgt 360  Q
    |||| ||||| ||||||||||| ||||| ||||| |||||||||     |||||||||||||| |||||||||||    
T  2979527 tatttttattattattatcaccgatgtacgttgtatgtttcaatatatagtttcattatcttttgtgtgttgtgt 2979601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 2938197 - 2938272
Alignment:
Q  312 aatgtatgttgtttgtttcaatggtttcattatctttcgtgtgttgtgtacttagattgaaattgtaatttcatataaataa 393  Q
    |||||| ||||||||||||||| |||||||||  ||| ||||||||||   |||||| |||| |||||||| ||||||||||    
T  2938197 aatgtacgttgtttgtttcaat-gtttcatta--ttttgtgtgttgtg---ttagatcgaaaatgtaatttgatataaataa 2938272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 21 - 348
Target Start/End: Complemental strand, 34859 - 34533
Alignment:
Q  21 cttgtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatccttgg 120  Q
    |||||||||| ||||| | |||||| ||||| ||  ||||||||||||||||||||||||| |||||||| |||||||||| | |||||| |||||||||    
T  34859 cttgtttaatcgtctttgcaaaaatgttatacatcataatatcagttctcatttctctattctttgcaaaaacttaaatgcattttgtagtaatccttgg 34760  T
Q  121 cataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcactataattc 220  Q
     ||| |||||||||| |||| |||||||||||| |||| ||||||||||| |||||||||||| |||||||| | |||||||||||||||||| |  |||    
T  34759 aataggttgaaggcttctctcaggcgtgattatggcaaaactccttggcaaactgctgcttccgttgctggaattttactacttgttctcactttgcttc 34660  T
Q  221 aaactgtttgttctgtcttgcaagtagtacaagcatcctagtcatttctttcattgttgagttcataattattgttattcttattatcaccaatgtatgt 320  Q
    || | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||  |||||| | |||| || |     
T  34659 aatcagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattattatcaatttacgc 34560  T
Q  321 tgtttgtttcaatggtttcattatcttt 348  Q
    ||||||||||||| ||||||||||||||    
T  34559 tgtttgtttcaat-gtttcattatcttt 34533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 43688 - 43599
Alignment:
Q  301 ttattatcaccaatgtatgttgtttgtttcaatggtttcattatctttcgtgtgttgtgtacttagattgaaattgtaatttcatataaata 392  Q
    ||||||||||||||||| |||||||||||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  43688 ttattatcaccaatgtacgttgtttgtttcaatggtttcatta--ttttgtgtgttgtgtaattagattgaaattgtaatttcatataaata 43599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 22 - 348
Target Start/End: Original strand, 3339487 - 3339815
Alignment:
Q  22 ttgtttaatggtcttggaaaaaatattataaattgtaatatcagttctcatttctctattttttgcaaagacttaaatgcttattgtaggaatccttggc 121  Q
    ||||||||||||||| | |||||| ||||  ||| || | | |||||||||||| ||| | || ||||||||||||||| || ||||| |||||||||||    
T  3339487 ttgtttaatggtctttgcaaaaatgttatgcattctagtgtaagttctcatttccctactcttggcaaagacttaaatgatttttgtaagaatccttggc 3339586  T
Q  122 ataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcactataattca 221  Q
    ||| |||||||||  |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||||||| || ||||    
T  3339587 ataggttgaaggccactctcaggcgtgattattgcaatactccttggcaaactgctgcttccattgctggaattgtactacttgttctcactttacttca 3339686  T
Q  222 aactgtttgttctgtcttgcaagtagtacaagcatcctagtcatttctttcattgttgagt---tcataattattgttattcttattatcaccaatgtat 318  Q
    | | |||||||||||||||||||||||||| || ||||||| ||||||||| |||||||||   |||||||||||| | ||  |||||| | |||||||     
T  3339687 atcagtttgttctgtcttgcaagtagtacaggcctcctagtgatttctttctttgttgagttcatcataattattgctcttagtattattatcaatgtac 3339786  T
Q  319 gttgtttgtttcaatggtttcattatcttt 348  Q
    |||||||||||| || ||||||||||||||    
T  3339787 gttgtttgtttccat-gtttcattatcttt 3339815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 112 - 251
Target Start/End: Original strand, 49618963 - 49619102
Alignment:
Q  112 aatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctca 211  Q
    ||||||||||||||  |||||||| |||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||| | |||||||||||||||     
T  49618963 aatccttggcataaactgaaggctactctcaggcgtgattatggcagtactccttggcaaactgctgcttccattgctggaattttactacttgttctct 49619062  T
Q  212 ctataattcaaactgtttgttctgtcttgcaagtagtaca 251  Q
    || || ||||| | ||||||||| |||||||||| |||||    
T  49619063 ctttacttcaatcagtttgttctatcttgcaagttgtaca 49619102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 393
Target Start/End: Original strand, 49613989 - 49614268
Alignment:
Q  113 atccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggagtcttactacttgttctcac 212  Q
    ||||||||||||  ||||||||  |||| || |||||||||||||| | ||||||||| ||||||||||||||||||||| | ||||||||| ||||| |    
T  49613989 atccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctctc 49614088  T
Q  213 tataattcaaactgtttgttctgtcttgcaagtagtacaa---------gcatcctagtcatttctttcattgttgagttcataattattgttattctta 303  Q
    | || ||||| | |||||| | || |||||||| ||||||         |  || |||| | |||  |||||||||| |||||||||||||| ||| |||    
T  49614089 tttacttcaatcagtttgtgcagtgttgcaagttgtacaacaatataatgattcatagtaagttcaatcattgttgaattcataattattgtgattatta 49614188  T
Q  304 ttatcaccaatgtatgttgtttgtttcaatggtttcattatctttcgtgtgttgtgtacttagattgaaattgtaatttcatataaataa 393  Q
    |||| |||||| || |     |||||||||||||||||||| || | |||    ||||| ||||||||||||| || |||||||||||||    
T  49614189 ttattaccaatttaag-----tgtttcaatggtttcattattttgcatgt----tgtac-tagattgaaattgcaacttcatataaataa 49614268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 49619136 - 49619207
Alignment:
Q  271 tcattgttgagttcataattattgttattcttattatcaccaatgtatgttgtttgtttcaatggtttcattatc 345  Q
    |||||||||||||||| |||||||  |   |||||||||||||| || |||||||||| ||||||||||||||||    
T  49619136 tcattgttgagttcatgattattgaca---ttattatcaccaatttacgttgtttgttccaatggtttcattatc 49619207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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