View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_27 (Length: 407)
Name: NF18417_low_27
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 42616211 - 42616601
Alignment:
| Q |
1 |
tcatcaggaatcaattagaaggacccaaatactnnnnnnntaatgctcaatatcaaaatatgatgatcttcaaatatactcactttcttgtattatatat |
100 |
Q |
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| T |
42616211 |
tcatcaggaatcaattagaaggacccaaatactaaaaaaataatgctcaatatcaaaatatgatgatcttcaaatatactcactttcttgtattatatat |
42616310 |
T |
|
| Q |
101 |
cacttccaaaacacaacatgccaaacccaccaaaatatagttcccttctttttccactccactgcctcaaatttcccaaagattgaaactttactcacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42616311 |
cacttccaaaacacaacatgccaaacccaccaaaatatagttcccttctttttccactccactgcctcaaatttcccaaagattgaaactttactcacta |
42616410 |
T |
|
| Q |
201 |
cttctaaatgggtaggcaagataatgatccaaccatggtgaactcttccatagctcttcttcaagaaaggtttagacaattagagaaagtaaaagaaagg |
300 |
Q |
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| T |
42616411 |
cttctaaatgggtaggcaagataatgatccaaccatggtgaactcttccatagctcttcttcaagaaaggtttagacaattagagaaagtaaaagaaagg |
42616510 |
T |
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| Q |
301 |
agagaaggtaaacaacttcttagattgttgtcaacagagaacaatacctcagcatcaacacaaaggttggtagttccaaataataggcaaa |
391 |
Q |
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| T |
42616511 |
agagaaggtaaacaacttcttagattgttgtcaacagagaacaatacctcagcatcaacacaaaggttggtagttccaaataataggcaaa |
42616601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 9587508 - 9587573
Alignment:
| Q |
242 |
actcttccatagctcttcttcaagaaaggtttagacaattagagaaagtaaaagaaaggagagaag |
307 |
Q |
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| T |
9587508 |
actcttccattgcacttctacaagagaggtttagacaattggaaagagtaaaagaaatgagagaag |
9587573 |
T |
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