View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_30 (Length: 381)
Name: NF18417_low_30
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 369
Target Start/End: Original strand, 39793846 - 39794201
Alignment:
| Q |
14 |
tagggtaagccataaggtctcactgagttccacctatcatagggtgatagtgatataagaaaaatctaagataactaattgtctgtaatatatgtgtatg |
113 |
Q |
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| T |
39793846 |
tagggtaagcgataaggtctcactgagttccacctatcatagggtgatagtgatatgagaaaaatctaagataactaattgtctgtaatatatgtgtatg |
39793945 |
T |
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| Q |
114 |
tttaattatactctcataatcatatattcaatacatttttaaaagttagcgtgtaacaaacaattaacccgagttgattttacgaaatgactgagtgatg |
213 |
Q |
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| T |
39793946 |
tttaattatactctcataatcatatatgcaatacatttttaaaagttagcgtgtaacaaacaattaacccgagttgattttacgaaatgactgagtgatg |
39794045 |
T |
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| Q |
214 |
tcgtcctgaaacatccctctgtctatccggctaaactccaatcataccaggctagagccggaactctcttgtcgtcatgaaggttttccttttggaaaaa |
313 |
Q |
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| T |
39794046 |
tcgtcctgaaacatccctctgtctatccggctaaactccaatcataccaggctagagccggaactctcttgtcgtcatgaaggttttccttttggaaaaa |
39794145 |
T |
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| Q |
314 |
atcatatcccaaataatctgatgcttcctaggccacgacttatctgaatataccta |
369 |
Q |
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| T |
39794146 |
atcatatcccaaataatctgatgcttcctaggccacgacttatctgaatataccta |
39794201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 2934925 - 2935017
Alignment:
| Q |
223 |
aacatccctctgtctatccggctaaactccaat---cataccaggctagagccggaactctcttgtcgtcatgaaggttttccttttggaaaa |
312 |
Q |
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| T |
2934925 |
aacatccctctggctatccggataaactcctatgatcatattaggctagagtcggactcctcttatcgtcatgaaagttttccttttagaaaa |
2935017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 7451357 - 7451450
Alignment:
| Q |
155 |
aaagttagcgtgtaacaaacaattaacccgagttgattttacgaaatgact-gagtgatgtcgtcctgaaacatccctctgtctatccggctaaa |
248 |
Q |
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| T |
7451357 |
aaagttagcgtgtaacaatcaattaacatgagttgattttatggaatggctggggtga-gtagtcttaaaacattcctctttctatccggctaaa |
7451450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 20327074 - 20327029
Alignment:
| Q |
24 |
cataaggtctcactgagttccacctatcatagggtgatagtgatat |
69 |
Q |
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| T |
20327074 |
cataaggtctcagtgacttccacctatcctagggtgaaagtgatat |
20327029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 7451229 - 7451273
Alignment:
| Q |
24 |
cataaggtctcactgagttccacctatcatagggtgatagtgata |
68 |
Q |
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| T |
7451229 |
cataaggtctcagtaagttccacctatcctagggtgataatgata |
7451273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 38094092 - 38094046
Alignment:
| Q |
156 |
aagttagcgtgtaacaaacaattaacccgagttgattttacgaaatg |
202 |
Q |
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| T |
38094092 |
aagttagcgtgtaaaaaacaattaatctgagttgattttacaaaatg |
38094046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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