View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_31 (Length: 380)
Name: NF18417_low_31
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 33433787 - 33433418
Alignment:
| Q |
1 |
agatggattcagaagaggattcaatgaaagtatttagggaagggattagtttggctatcaacttttggtgggttattcgattgaaaattaggcgcaaaag |
100 |
Q |
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| T |
33433787 |
agatggatttagaagaggattcaatgaaagtatttagggaagggattagtttggctatcaacttttggtgggttattcgattgaaaattaggcgcaaaag |
33433688 |
T |
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| Q |
101 |
cctctgtgactatgagtcgtcccccgagcgatgtgttgaatggctttgtgacaccatattttctcgtttcattcgatccaaacacctgccttcagcaact |
200 |
Q |
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| T |
33433687 |
cctctgtgactatgagtcgtcccccgagcgatgtgttgaatggctttgtgacaccatattttctcgtttcattcgatccaaacacctgccttcagcaact |
33433588 |
T |
|
| Q |
201 |
attaaacttcaactcaaatttcaacttatttctttccttagtaatgttcctcctgagtataacagcattctagaggtgcgtgcccttatttttattgatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33433587 |
attaaacttcaactcaaatttcaacttatttctttccttagtaatgttcctcctgaggataacagcattctagaggtgtgtgcccttatttttattgatt |
33433488 |
T |
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| Q |
301 |
caataatcatatatannnnnnnnnaccgtccgtgtttgcagtcaatctttactcttgttttgtaggtctgtg |
372 |
Q |
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|||||||||| | | |||||||||||||||| ||||||||||||||| |||||||||| |||| |
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| T |
33433487 |
caataatcattttt--ttttttttaccgtccgtgtttgcaatcaatctttactcttattttgtaggtgtgtg |
33433418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 33970136 - 33970181
Alignment:
| Q |
8 |
ttcagaagaggattcaatgaaagtatttagggaagggattagtttg |
53 |
Q |
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| T |
33970136 |
ttcagaagaggattcaatgaaagtattgaggaaagggattagtttg |
33970181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 33111609 - 33111659
Alignment:
| Q |
21 |
tcaatgaaagtatttagggaagggattagtttggctatcaacttttggtgg |
71 |
Q |
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|||||||||||||| ||||| ||||||| | ||| |||||||||||||||| |
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| T |
33111609 |
tcaatgaaagtattcagggatgggattaatatggttatcaacttttggtgg |
33111659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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