View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_33 (Length: 349)
Name: NF18417_low_33
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 82 - 331
Target Start/End: Complemental strand, 5175087 - 5174840
Alignment:
| Q |
82 |
tataattgagtttcatttggacaaaccaaattggaa---atcttaatctgtctaaggtcattttttgcttagcttggactattgaaatttactaactgct |
178 |
Q |
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| T |
5175087 |
tataattgagtttcatttggacaaacccaattggaattaatcttaatctgtctaaggtcattttttgctt-----ggactattgaaatttactaactgct |
5174993 |
T |
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| Q |
179 |
agtgactacatctattatctttttgtttttaactcattattgccatttttattgtcaataataatgattactactgtgttgcctaaggtaatgtttagag |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174992 |
agtgactacatctattatctttttgtttttaactcattattgccatttttattgtcaataataatgattactactgtgttgcctaaggtaatgtttagag |
5174893 |
T |
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| Q |
279 |
taagacaaggggagggatttaagtatatatttttaactcctatggctatgttt |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174892 |
taagacaaggggagggatttaagtatatatttttaactcctatggctatgttt |
5174840 |
T |
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