View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_34 (Length: 345)
Name: NF18417_low_34
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 4982157 - 4981864
Alignment:
| Q |
18 |
cacgtggttcggaagaaggttttaaattcgacgacgacgatgataattcttttgtcgtcgtagtcgttgtcgttggtgattcgaataaagtacagagctt |
117 |
Q |
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| T |
4982157 |
cacgtggttcggaagaaggttttaaattcgacgacgatgatgataattcttttgtggtcgtcgtcgttg------gtgattcgaataaagtgcagatctt |
4982064 |
T |
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| Q |
118 |
cttcaccattcttccacgtagagatgatttcattgactccattgaaccgtagaatttgcttaacgaaccggaccggtctagaaattcgttgaatggtttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4982063 |
cttcaccattcttccacgtagagatgatttcattgactccattgaaccgtagaatttgcttaacgaaccggaccggtctagaaattcgttgaatggtttc |
4981964 |
T |
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| Q |
218 |
tgtgattgttcttttgatgacgtgtgcatcgtgttcgatcggttgaagaattgaaacctcgacatctttgaaaattcttcgaaaaattcgataattcaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4981963 |
tgtgattgttcttttgatgacgtgtgcatcgtgttcgatcggttgaagaattgaaacctcgacatctttgaaaattcttcgaaaaattcgataattcaac |
4981864 |
T |
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