View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_35 (Length: 343)
Name: NF18417_low_35
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 43407825 - 43408147
Alignment:
| Q |
18 |
atttgaattagtgattatgagttgatgtggtatttctaatgattggcaatgaaaagaagaagaaaa-----atgagagcaaagtgacaattaaggaacct |
112 |
Q |
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| T |
43407825 |
atttgaattagtgattatgagttgatgtggtatttctaatgattggcaatgaaaagaagaagaaaagaaaaatgagagcaa-gtgacaattaaggaacct |
43407923 |
T |
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| Q |
113 |
acctgatcaaagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatgattagaagaagctgaatggacacagaaaga |
212 |
Q |
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| T |
43407924 |
acctgatcaaagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatgattagaagaagctgaatggacacagaaaga |
43408023 |
T |
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| Q |
213 |
ataaaataagggaatgaacaatgttgtgtaactagttgttgtagttggaattaaaatacatgattttgaagtgagggtgtggcagggtttttatagcact |
312 |
Q |
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| T |
43408024 |
ataaaataagggaatgaacaatgttgtgtaactagttgttgtagttggaattaaaatacatgattttgaagtgagggtgtggcagggtttttatagcact |
43408123 |
T |
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| Q |
313 |
caaaaaatgttctgtcctatgctt |
336 |
Q |
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| T |
43408124 |
caaaaaatgttctgtcctatgctt |
43408147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 43395678 - 43395799
Alignment:
| Q |
95 |
gtgacaattaaggaacctacctgatcaaagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatgatt---agaaga |
191 |
Q |
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| T |
43395678 |
gtgaaaattaaggaacctacttgatcaaagagggactgtttcattgcagcaagttgtctgcgagaattgtttctgtccatgattgatgattagaagaaga |
43395777 |
T |
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| Q |
192 |
agctgaatggacacagaaagaa |
213 |
Q |
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| T |
43395778 |
agctgaagggacacagaaagaa |
43395799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 43395869 - 43395909
Alignment:
| Q |
296 |
agggtttttatagcactcaaaaaatgttctgtcctatgctt |
336 |
Q |
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| T |
43395869 |
agggtttttatagcacccaaaagatgtcctgtcctatgctt |
43395909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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