View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18417_low_36 (Length: 328)

Name: NF18417_low_36
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18417_low_36
NF18417_low_36
[»] chr5 (1 HSPs)
chr5 (19-314)||(14472451-14472746)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 14472746 - 14472451
Alignment:
Q  19 ggagctatttgtgagttcattggttcatttgctttatgggttttacatatttagttcagctgttgctggagatctatcaattgttgttaatgaatatttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14472746 ggagctatttgtgagttcattggttcatttgctttatgggttttacatatttagttcagctgttgctggagatctatcaattgttgttaatgaatatttt 14472647  T
Q  119 caaaaggataagatgaagaatgatgttgtggttcaagagaatttgaaaattgatgaaaaagattcaaaatttgataatgatcttcctcctattgttttgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14472646 caaaaggataagatgaagaatgatgttgtggttcaagagaatttgaaaattgatgaaaaagattcaaaatttgataatgatcttcctcctattgttttgg 14472547  T
Q  219 ttcatggaatttttggatttggcaaaggggtaatgattcatcaatgttgtttctgtctcaaaattaacgtttttgttatgtttatgttgttttgtt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14472546 ttcatggaatttttggatttggcaaaggggtaatgattcatcaatgttgtttctgtctcaaaattaacgtttttgttatgtttatgttgttttgtt 14472451  T

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