View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18417_low_37 (Length: 319)

Name: NF18417_low_37
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18417_low_37
NF18417_low_37
[»] chr2 (1 HSPs)
chr2 (18-308)||(15303348-15303641)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 15303348 - 15303641
Alignment:
Q  18 gtttttgcattgttt-gtttggtcttttaaagcattattttgcattcttacgtgacttttagtggtcttagtaaagtcatgtaatgtctaaga---acat 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||    
T  15303348 gtttttgcattgttttgtttggtcttttaaagcattattttgcattcttacgtgacttttagtggtcttagtaaagtcatgtaatgtttaagaagaacat 15303447  T
Q  114 tgacaatattttggtccaatggcacaataatgggaaatgcaagaatattgcaattcaggttggaatattctacacatctccacttctatggttctttagc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15303448 tgacaatattttggtccaatggcacaataatgggaaatgcaagaatattgcaattcaggttggaatattctacacatctccacttctatggttctttagc 15303547  T
Q  214 taatgaaccaaccttgtccatcaaaatttccttccaaacatcttcacattattgtacttggatttggatggacatttagtcaacaaattgttcat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||    
T  15303548 taatgaaccaaccttgtccatcaaaatttccttccaaacatcttcacattattgtacttgga-ttggattgacatttattcaagaaattgttcat 15303641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University