View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_38 (Length: 304)
Name: NF18417_low_38
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 54775816 - 54775523
Alignment:
| Q |
1 |
tagaaatagtatagtaattaacacggtaatactgttatattgacacagtcagttataaatgaggaagatgagaaattaaaaaagctcaagcaggaatggg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54775816 |
tagaaatagtatagtaattaacacggtaatactgttatattgacacagtcagttataaatgaggaagatgagaaattgaaaaagctcaagcaggaatggg |
54775717 |
T |
|
| Q |
101 |
gagatgagatatattcagctgttgaaacagccttgaaagaagtaaatgaatacaatccaagtggtggttatgctgtacatgagctatggaacttcaagga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54775716 |
gagatgagatatattcagctgttgaaacagccttgaaagaagtaaatgaatacaacccaagtggtgggtatgctgtacatgagctatggaacttcaagga |
54775617 |
T |
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| Q |
201 |
acagaggaaggcaacactaaaagaagttattacttatatcgtggaacatatgatatgaagcaacttaagcgcaagaatttaaaaatgaaaataa |
294 |
Q |
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| T |
54775616 |
acagaggaaggcaacactaaaagaagttattacttatatcgtggaacatatgatatgaagcaacttaagcgcaagaatttaaaaatgaaaataa |
54775523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 54793823 - 54794093
Alignment:
| Q |
1 |
tagaaatagtatagtaattaacacggtaatactgttatattgacacagtcagttataaatgaggaagatgagaaattaaaaaagctcaagcaggaatggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793823 |
tagaaatagtatagtaattaacacggtaatactgttatattgacacagtcagttataaatgaggaagatgagaaattaaaaaagctcaagcaggaatggg |
54793922 |
T |
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| Q |
101 |
gagatgagatatattcagctgttgaaacagccttgaaagaagtaaatgaatacaatccaagtggtggttatgctgtacatgagctatggaacttcaagga |
200 |
Q |
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| T |
54793923 |
gagatgagatatattcagctgttgaaacagccttgaaagaagtaaatgaatacaacccaagtggtgggtattctgtacatgagctatggaacttcaagga |
54794022 |
T |
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| Q |
201 |
acagaggaaggcaacactaaaagaagttattacttatatcgtggaacatatgatatgaagcaacttaagcgcaaga |
276 |
Q |
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| T |
54794023 |
acagaggaaggcaacactaaaagaagttattacttatatcgtggaac-----atatgaagcaacttaagcgcaaga |
54794093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 52286504 - 52286774
Alignment:
| Q |
1 |
tagaaatagtatagtaattaacacggtaatactgttatattgacacagtcagttataaatgaggaagatgagaaattaaaaaagctcaagcaggaatggg |
100 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52286504 |
tagaaatagtataataattaacacggtaatactattatattgacacagtcagtcatgaatgaggaagatgagaagttaaaaaagctcaagcaggaatggg |
52286603 |
T |
|
| Q |
101 |
gagatgagatatattcagctgttgaaacagccttgaaagaagtaaatgaatacaatccaagtggtggttatgctgtacatgagctatggaacttcaagga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |
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| T |
52286604 |
gagatgagatatattcagctgttgaaacagccttgaaagaagtaaatgaatacaatccaagtggtgggtatgctgtatatgagctgtggaacttcaagga |
52286703 |
T |
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| Q |
201 |
acagaggaaggcaacactaaaagaagttattacttatatcgtggaacatatgatatgaagcaacttaagcgcaaga |
276 |
Q |
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| T |
52286704 |
acagaggaaggcaacactaaaagaagttattacttatatcgtggaac-----atatgaagcaacttaagcgcaaga |
52286774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 2 - 274
Target Start/End: Original strand, 801668 - 801935
Alignment:
| Q |
2 |
agaaatagtatagtaattaacacggtaatactgttatattgacacagtcagttataaatgaggaagatgagaaattaaaaaagctcaagcaggaatgggg |
101 |
Q |
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||||||||| || ||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| || ||||||| ||| |||||||||| |
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| T |
801668 |
agaaatagtgtaataattaacacggtaatattgttgtattgacacagtcagttatagatgaggaagatgagaaactacaaaagctgaagaaggaatgggg |
801767 |
T |
|
| Q |
102 |
agatgagatatattcagctgttgaaacagccttgaaagaagtaaatgaatacaatccaagtggtggttatgctgtacatgagctatggaacttcaaggaa |
201 |
Q |
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||| ||||||||||||||||||| ||||||||| |||||||| || || ||||| ||||||||||| ||| |||| ||||| ||||||||||| ||| |
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| T |
801768 |
agacgagatatattcagctgttgtaacagccttaaaagaagttaacgagtacaacccaagtggtgggtatactgtttgggagctgtggaacttcaaagaa |
801867 |
T |
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| Q |
202 |
cagaggaaggcaacactaaaagaagttattacttatatcgtggaacatatgatatgaagcaacttaagcgcaa |
274 |
Q |
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| T |
801868 |
aataggaaggcaacactgaaagaagtgatcacttatattgtgg-----atcatatgaagcaacttaagcgcaa |
801935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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