View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18417_low_41 (Length: 289)

Name: NF18417_low_41
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18417_low_41
NF18417_low_41
[»] chr2 (13 HSPs)
chr2 (1-245)||(39812034-39812278)
chr2 (1-228)||(32246596-32246827)
chr2 (1-219)||(44312670-44312887)
chr2 (2-223)||(19344237-19344459)
chr2 (2-223)||(19349095-19349317)
chr2 (1-217)||(11098985-11099196)
chr2 (1-217)||(14291316-14291527)
chr2 (4-217)||(9296462-9296670)
chr2 (1-152)||(25398386-25398534)
chr2 (1-152)||(25403524-25403672)
chr2 (1-39)||(3491751-3491789)
chr2 (1-39)||(40738844-40738882)
chr2 (242-271)||(40069060-40069089)
[»] chr8 (16 HSPs)
chr8 (1-233)||(39784868-39785102)
chr8 (1-246)||(25328324-25328569)
chr8 (1-217)||(6311121-6311336)
chr8 (1-217)||(7289972-7290188)
chr8 (1-217)||(36979205-36979416)
chr8 (1-222)||(35745208-35745430)
chr8 (1-202)||(33037864-33038063)
chr8 (1-217)||(10689201-10689412)
chr8 (4-202)||(4760136-4760332)
chr8 (1-202)||(18853226-18853425)
chr8 (1-217)||(30655469-30655685)
chr8 (1-222)||(10684310-10684533)
chr8 (1-217)||(18870620-18870828)
chr8 (1-39)||(26287902-26287940)
chr8 (1-39)||(26301159-26301197)
chr8 (1-39)||(26313153-26313191)
[»] chr7 (18 HSPs)
chr7 (2-245)||(31109630-31109872)
chr7 (1-223)||(12406149-12406370)
chr7 (1-223)||(12396729-12396950)
chr7 (1-223)||(4866547-4866769)
chr7 (1-245)||(24024372-24024618)
chr7 (1-222)||(19992130-19992352)
chr7 (1-223)||(21812284-21812507)
chr7 (4-217)||(20357608-20357816)
chr7 (1-217)||(2057786-2058004)
chr7 (1-222)||(16879889-16880112)
chr7 (1-222)||(16884745-16884968)
chr7 (1-222)||(24261369-24261592)
chr7 (1-222)||(24266248-24266471)
chr7 (1-217)||(1533502-1533709)
chr7 (1-152)||(21639701-21639847)
chr7 (2-152)||(21645899-21646044)
chr7 (1-62)||(18408742-18408802)
chr7 (1-62)||(18413619-18413679)
[»] chr6 (14 HSPs)
chr6 (1-245)||(28184297-28184544)
chr6 (1-246)||(14737622-14737867)
chr6 (4-245)||(14742485-14742725)
chr6 (1-219)||(22010743-22010960)
chr6 (1-228)||(6438313-6438540)
chr6 (4-223)||(11856789-11857010)
chr6 (1-245)||(28155615-28155861)
chr6 (1-222)||(6005234-6005456)
chr6 (1-222)||(16838561-16838783)
chr6 (2-222)||(5343297-5343519)
chr6 (1-222)||(33330491-33330715)
chr6 (127-222)||(33336115-33336212)
chr6 (95-217)||(30125944-30126063)
chr6 (1-217)||(5674828-5675036)
[»] chr3 (20 HSPs)
chr3 (1-245)||(22173241-22173484)
chr3 (1-246)||(18656227-18656474)
chr3 (1-217)||(7167072-7167283)
chr3 (1-217)||(2671644-2671855)
chr3 (1-223)||(2677133-2677357)
chr3 (1-217)||(28503922-28504124)
chr3 (1-223)||(2672977-2673201)
chr3 (1-222)||(8512032-8512256)
chr3 (1-222)||(8516912-8517136)
chr3 (1-222)||(10207750-10207973)
chr3 (4-191)||(24967957-24968143)
chr3 (1-217)||(8739121-8739333)
chr3 (1-217)||(9091359-9091571)
chr3 (1-222)||(32475301-32475524)
chr3 (1-222)||(32480158-32480382)
chr3 (1-217)||(8477193-8477401)
chr3 (1-57)||(40372853-40372908)
chr3 (2-39)||(1305949-1305986)
chr3 (1-62)||(26928649-26928709)
chr3 (129-217)||(40372980-40373064)
[»] chr4 (12 HSPs)
chr4 (1-228)||(45347863-45348090)
chr4 (1-228)||(45357342-45357569)
chr4 (1-223)||(9224453-9224674)
chr4 (1-223)||(9229240-9229461)
chr4 (1-246)||(5732457-5732704)
chr4 (1-222)||(18855544-18855766)
chr4 (1-217)||(51520280-51520496)
chr4 (1-218)||(56146757-56146974)
chr4 (1-228)||(3813835-3814063)
chr4 (1-217)||(29760470-29760680)
chr4 (1-217)||(24741769-24741979)
chr4 (1-39)||(28468587-28468625)
[»] scaffold0135 (1 HSPs)
scaffold0135 (1-223)||(35108-35329)
[»] chr5 (22 HSPs)
chr5 (4-246)||(15044483-15044722)
chr5 (1-217)||(43592102-43592318)
chr5 (1-217)||(43598547-43598763)
chr5 (1-217)||(43604039-43604255)
chr5 (1-217)||(43609531-43609747)
chr5 (1-217)||(27444793-27445009)
chr5 (1-217)||(27449637-27449853)
chr5 (1-223)||(28807618-28807843)
chr5 (1-217)||(1457208-1457423)
chr5 (1-224)||(37561490-37561716)
chr5 (1-224)||(37556668-37556894)
chr5 (1-217)||(30631231-30631445)
chr5 (1-222)||(2785192-2785414)
chr5 (1-222)||(31397039-31397261)
chr5 (4-222)||(31401899-31402118)
chr5 (1-222)||(33791133-33791355)
chr5 (1-222)||(33767996-33768218)
chr5 (1-117)||(31180138-31180253)
chr5 (1-152)||(24135740-24135887)
chr5 (1-152)||(38192064-38192212)
chr5 (1-152)||(38219289-38219437)
chr5 (1-152)||(35387555-35387701)
[»] chr1 (10 HSPs)
chr1 (1-246)||(44023919-44024164)
chr1 (1-246)||(39445291-39445539)
chr1 (1-228)||(25445135-25445363)
chr1 (1-222)||(1055057-1055279)
chr1 (1-246)||(41398031-41398275)
chr1 (143-245)||(41386543-41386646)
chr1 (1-202)||(24787422-24787624)
chr1 (1-222)||(43988510-43988734)
chr1 (1-152)||(24202827-24202973)
chr1 (1-141)||(41390485-41390620)
[»] scaffold0355 (2 HSPs)
scaffold0355 (1-245)||(9688-9930)
scaffold0355 (97-240)||(28-166)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-246)||(154-402)
[»] scaffold0127 (1 HSPs)
scaffold0127 (143-245)||(34136-34239)
[»] scaffold0197 (2 HSPs)
scaffold0197 (1-222)||(19211-19433)
scaffold0197 (1-222)||(14355-14578)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-222)||(149002-149224)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-222)||(2297-2519)
[»] scaffold0978 (1 HSPs)
scaffold0978 (7-217)||(300-506)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-222)||(182010-182233)
[»] scaffold0479 (1 HSPs)
scaffold0479 (156-246)||(13140-13233)
[»] scaffold0188 (2 HSPs)
scaffold0188 (1-152)||(18010-18157)
scaffold0188 (1-39)||(24103-24141)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 39812034 - 39812278
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtgt 100  Q
    ||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39812034 cagattaggccatattggctgaactggttcaacaatcttct-cggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtgt 39812132  T
Q  101 ggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt-g 199  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  39812133 ggttttgctatacactagcttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttgg 39812232  T
Q  200 tttatttcattggtgtgaaggtttgtttggaaccgaattcaaaaca 245  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||||    
T  39812233 tttatttcattggtgtgaaggtttctttggaaccggattcacaaca 39812278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32246827 - 32246596
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttacc---gcttatcttgtttgtgctttggaatctcttg 97  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||      ||||||||||||| |||||||||||||||||    
T  32246827 cagattaggccatattggctgaacaaggtcaacaatcttgttcggtgttttgttcttcctttttttcttgcttatcttgtttatgctttggaatctcttg 32246728  T
Q  98 tgtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    |||||||||||||||||||||  ||||  ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  32246727 tgtggttttgctatacactagtctaggactgttttgttgttgttagcttggagaccatttgttctcatagattaccactatcacttgctccacacatcat 32246628  T
Q  198 t-gtttatttcattggtgtgaaggtttgtttg 228  Q
    | ||||||||||||||||||||||||| ||||    
T  32246627 tggtttatttcattggtgtgaaggtttctttg 32246596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 44312670 - 44312887
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||| |||||||||||||| |||||||| ||||||| |||    
T  44312670 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttcttccttttatcgcttatcttgttt-tgctttggtatctctttgtg 44312767  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    ||||||||||||||||| |  |||||  | |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44312768 tggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg 44312867  T
Q  200 tttatttcattggtgtgaag 219  Q
    ||||||||||||||||||||    
T  44312868 tttatttcattggtgtgaag 44312887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 19344459 - 19344237
Alignment:
Q  2 agattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt--cttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    ||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||  |||||| || ||||||||| ||    |||  | ||||| ||    
T  19344459 agattaggccacattggctgaactgggtcaacaatcttgctcggtgttttgttcttttccttttatcgtttatcttgtatgc---ttgttagctcttagt 19344363  T
Q  99 gtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    |||||||||||||||| ||| |||||| | |||||||||||||| |||||||| ||||||| |||||| ||||| ||||||| ||||||||||||||| |    
T  19344362 gtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctt 19344264  T
Q  198 t-gtttatttcattggtgtgaaggttt 223  Q
    | |||||||||||||||||||||||||    
T  19344263 tggtttatttcattggtgtgaaggttt 19344237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 19349317 - 19349095
Alignment:
Q  2 agattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt--cttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    ||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||  |||||| || ||||||||| ||    |||  | ||||| ||    
T  19349317 agattaggccacattggctgaactgggtcaacaatcttgctcggtgttttgttcttttccttttatcgtttatcttgtatgc---ttgttagctcttagt 19349221  T
Q  99 gtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    |||||||||||||||| ||| |||||| | |||||||||||||| |||||||| ||||||| |||||| ||||| ||||||| ||||||||||||||| |    
T  19349220 gtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctt 19349122  T
Q  198 t-gtttatttcattggtgtgaaggttt 223  Q
    | |||||||||||||||||||||||||    
T  19349121 tggtttatttcattggtgtgaaggttt 19349095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 11098985 - 11099196
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctc-ttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||   | |||||||||||| |||||||| ||||| |||||    
T  11098985 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttcttcctttcttc-cttatcttgttt-tgctttggtatctctttgtg 11099081  T
Q  100 tggttttgctatacactagcttagggttg-ttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    |||||||||| ||||||||  ||||| || ||||||||||||| ||||||| ||||||| |  |||||||||| ||||||| ||||||||||||||| ||    
T  11099082 tggttttgctctacactagtctagggctgtttttgttgttgtt-gcttggaaaccattt-tgttcattgattaccactatctcttgctccacacatcttt 11099179  T
Q  199 gtttatttcattggtgtga 217  Q
    |||  ||||||||||||||    
T  11099180 gtt--tttcattggtgtga 11099196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 14291527 - 14291316
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||    ||||||||||||| |||||||  ||||||| |||    
T  14291527 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttcttcctttctt-gcttatcttgttt-tgctttgttatctctttgtg 14291431  T
Q  100 tggttttgctatacactagcttagggttgtttt-gttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    |||||||||| |||| |||  ||||| |||||| ||||||||| ||||||| ||||||| | | ||||||||| ||||||| ||||||||||||| | ||    
T  14291430 tggttttgctctacattagtctagggctgtttttgttgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacaccttt 14291332  T
Q  199 gtttatttcattggtgtga 217  Q
    ||   ||||||||||||||    
T  14291331 gt---tttcattggtgtga 14291316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 9296462 - 9296670
Alignment:
Q  4 attaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtgtgg 102  Q
    |||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||    |||| |||||||| |||||||  ||||||| ||||||    
T  9296462 attaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttcttcctttctt-gcttttcttgttt-tgctttgttatctctttgtgtgg 9296558  T
Q  103 ttttgctatacactagcttagggttg-ttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtt 201  Q
    ||||||| ||||||||  ||||| || ||||||||||||| ||||||| ||||||| | ||||| ||||| ||||| |  |||||||||||||| ||||     
T  9296559 ttttgctctacactagactagggctgtttttgttgttgtttgcttggaaaccattt-tgctcatagattaccactaccttttgctccacacatctttgt- 9296656  T
Q  202 tatttcattggtgtga 217  Q
      ||||||||||||||    
T  9296657 --tttcattggtgtga 9296670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 25398534 - 25398386
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||| ||||||||||||| ||||||||||||||| || ||||| ||||||||| ||||    ||||||||||||||  ||||| | |||||||||    
T  25398534 cagattaggtcatattggctgaactgggtcaacaatcttttt-ggtgtgtttgttcttcctttctt-gcttatcttgtttg--ctttgtattctcttgtg 25398439  T
Q  100 tggttttgctatacactagcttagggttg-ttttgttgttgttggcttggagac 152  Q
    |||| ||||| ||||||||  ||||| || ||||||||||||| ||||||||||    
T  25398438 tggtgttgctctacactagtctagggctgtttttgttgttgtt-gcttggagac 25398386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 25403672 - 25403524
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||| ||||||||||||| || |||||||||||| || ||||| ||||||||| ||||    ||||||||||||||  ||||| | |||||||||    
T  25403672 cagattaggtcatattggctgaactgagtcaacaatcttttt-ggtgtgtttgttcttcctttctt-gcttatcttgtttg--ctttgtattctcttgtg 25403577  T
Q  100 tggttttgctatacactagcttagggttg-ttttgttgttgttggcttggagac 152  Q
    |||| ||||| ||||||||  ||||| || ||||||||||||| ||||||||||    
T  25403576 tggtgttgctctacactagtctagggctgtttttgttgttgtt-gcttggagac 25403524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3491789 - 3491751
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatctt 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  3491789 cagattaggccatattggctgaactgggtcaacaatctt 3491751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40738882 - 40738844
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatctt 39  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  40738882 cagattaggtcatattggctgaactgggtcaacaatctt 40738844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 40069060 - 40069089
Alignment:
Q  242 aacaagttcattacaagaatgatcatatag 271  Q
    ||||||||||||||||||||||||||||||    
T  40069060 aacaagttcattacaagaatgatcatatag 40069089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39784868 - 39785102
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttc-ttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39784868 cagattaggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgcttatcttgtttgtgctttggaatctcttgtg 39784967  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt- 198  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  39784968 tggttttgctatacactagcttagggctgttttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttg 39785067  T
Q  199 gtttatttcattggtgtgaaggtttgtttggaacc 233  Q
    ||||||||||||||||||||||||| |||||||||    
T  39785068 gtttatttcattggtgtgaaggtttctttggaacc 39785102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 25328324 - 25328569
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt-cttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| | ||||||| |||||| |||| || ||||| ||||||||||    
T  25328324 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttcttttcctttaccgtttatctcgtttatgttttggtatctcttgtg 25328422  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25328423 tggttttgctatacactag-ttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacatcattg 25328521  T
Q  200 -tttatttcattggtgtgaaggtttgtttggaaccgaattcaaaacaa 246  Q
     |||||||||||| ||||||||||| |||||||||| ||||| |||||    
T  25328522 atttatttcattgttgtgaaggtttctttggaaccggattcacaacaa 25328569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 6311336 - 6311121
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||    ||||||||||||| |||||||  ||||||| |||    
T  6311336 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttcttcctttctt-gcttatcttgtttatgctttgttatctcttagtg 6311239  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || |||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6311238 tggttttgctatacactagtctagggctgctttgttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 6311139  T
Q  200 tttatttcattggtgtga 217  Q
    ||||||||||||||||||    
T  6311138 tttatttcattggtgtga 6311121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 7289972 - 7290188
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||| | |||||||||||| || ||||  ||||||| |||    
T  7289972 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttcttccttttatcacttatcttgtttatggtttgttatctctttgtg 7290070  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || |||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||    
T  7290071 tggttttgctatacactagtctagggctgctttgttgttgtttgtttggagaccatttgttctcattgattaccactatctcttgctccacacatcaatg 7290170  T
Q  200 tttatttcattggtgtga 217  Q
    ||||||||||||||||||    
T  7290171 tttatttcattggtgtga 7290188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 36979416 - 36979205
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||    ||||||||||||| |||||||| ||||||| |||    
T  36979416 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttcttcctttctt-gcttatcttgttt-tgctttggtatctctttgtg 36979320  T
Q  100 tggttttgctatacactagcttagggttgtttt-gttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    |||||||||| ||||||||  ||||| |||||| |||||||||| |||||| |||||||  | |||||||||| ||||||| ||||||||||||||| ||    
T  36979319 tggttttgctctacactagtctagggctgtttttgttgttgttg-cttggaaaccattttgt-tcattgattaccactatctcttgctccacacatcttt 36979222  T
Q  199 gtttatttcattggtgtga 217  Q
    |||  ||||||||||||||    
T  36979221 gtt--tttcattggtgtga 36979205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35745430 - 35745208
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt--cttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||  |||||| || ||||||||| ||    |||  | ||||| |    
T  35745430 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttt-gttcttttccttttatcgtttatcttgtatgc---ttgttagctcttag 35745335  T
Q  98 tgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||| ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  35745334 tgtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 35745236  T
Q  197 tt-gtttatt-tcattggtgtgaaggtt 222  Q
    || ||||||| |||||||||||||||||    
T  35745235 ttggtttattctcattggtgtgaaggtt 35745208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 33037864 - 33038063
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctc-ttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||||   ||||||||||||| |||||||| ||||| |||||    
T  33037864 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttc-ttcttttcttgcttatcttgttt-tgctttggtatctctttgtg 33037960  T
Q  100 tggttttgctatacactagcttagggttgtt--ttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    |||||||||| ||||||||  ||||| ||||  ||||||||||| ||||||| ||||||| |  |||||||||| ||||||| ||||||||||||||| |    
T  33037961 tggttttgctctacactagtctagggctgtttattgttgttgtt-gcttggaaaccattt-tgttcattgattaccactatctcttgctccacacatctt 33038058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 10689201 - 10689412
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttt--taccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||  |||   ||||||||||| |||||||| ||||||| |    
T  10689201 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttcttcctttcttac---ttatcttgttt-tgctttggtatctctttg 10689295  T
Q  98 tgtggttttgctatacactagcttagggttgtttt-gttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    |||||||||||| |||||||   |||||||||||| |||||||||| |||||| |||||| |  ||||| ||||| ||||||| |||||||||||||||     
T  10689296 tgtggttttgctctacactacactagggttgtttttgttgttgttg-cttggaaaccattaga-ctcatagattaccactatctcttgctccacacatct 10689393  T
Q  197 ttgtttatttcattggtgtga 217  Q
    |||||  ||||||||||||||    
T  10689394 ttgtt--tttcattggtgtga 10689412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 4760136 - 4760332
Alignment:
Q  4 attaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtgtgg 102  Q
    |||||||||||||||||||| ||||||||||||||| || | |||||||||||| ||||    ||||||||||||| |||||||  ||||||| ||||||    
T  4760136 attaggccatattggctgaactgggtcaacaatcttctt-gatgttttgttcttcctttctt-gcttatcttgtttatgctttgttatctctttgtgtgg 4760233  T
Q  103 ttttgctatacactagcttagggttgtttt-gttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtt 201  Q
    ||||||| ||||||||  ||||| |||||| |||||||||| |||||| ||||||| | ||||||||||| ||||||| || |||||||||||| |||||    
T  4760234 ttttgctctacactagtctagggctgtttttgttgttgttg-cttggaaaccattt-tgctcattgattaccactatctctagctccacacatctttgtt 4760331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 18853226 - 18853425
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctc-ttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||| ||| |||   ||||||||||||| |||||||| ||||| |||||    
T  18853226 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttc-ttcctttcttgcttatcttgttt-tgctttggtatctctttgtg 18853322  T
Q  100 tggttttgctatacactagcttaggg-ttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    |||||||||| || || ||  |||||  | |||| |||||||| ||||||| ||||||||  ||||| ||||| ||||||| ||||||||||||||| ||    
T  18853323 tggttttgctctaaacaagtctagggcgtttttttttgttgtttgcttggaaaccatttg-actcatagattaccactatctcttgctccacacatcttt 18853421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 30655685 - 30655469
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttctt---ttaccgcttatcttgtttgtgctttggaatctct-t 96  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||| ||  |||||   ||   ||||||||||||| |||||||  |||||| |    
T  30655685 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttttttgttcttcctttcttgcttatcttgtttatgctttgttatctctat 30655587  T
Q  97 gtgtggttttgctatacactagcttagggttgttttgttgttgttg--gcttggagaccatttgttctcattgattatcactatcacttgctccacacat 194  Q
    ||||||||||||| ||||||||  ||||| |||||| |||||||||  ||||||| |||||||  | |||||||||| ||||||| ||||||||||||||    
T  30655586 gtgtggttttgctctacactagtctagggctgtttt-ttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacat 30655489  T
Q  195 cattgtttatttcattggtgtga 217  Q
    | ||||   ||||||||||||||    
T  30655488 ctttgt---tttcattggtgtga 30655469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10684310 - 10684533
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||||||||  ||||||||| || ||||||||| ||    |||  | ||||| |    
T  10684310 cagattaggccacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttgtatg---cttgttagctcttag 10684406  T
Q  98 tgtggttttgctatacacta-gcttagggttgttttgttgttg-ttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    ||||| |||||| |||| || ||||| || ||||||||||||| || |||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||    
T  10684407 tgtggatttgct-tacattaggctta-ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatc 10684504  T
Q  196 attg-tttatt-tcattggtgtgaaggtt 222  Q
     ||| |||||| |||||||||||||||||    
T  10684505 tttgatttattctcattggtgtgaaggtt 10684533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 18870620 - 18870828
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctc-ttgtg 99  Q
    |||||||||||||||||| |||| ||||||||||||||| || |||||||||||| ||| |||   ||||||||||||| |||||||| ||||| |||||    
T  18870620 cagattaggccatattggatgaactgggtcaacaatcttctt-ggtgttttgttc-ttcctttcttgcttatcttgttt-tgctttggtatctctttgtg 18870716  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||| || || ||  |||||  ||||| |||||||| ||||||| |||||||   ||||| ||||| || |||| ||||||||||||||| |||    
T  18870717 tggttttgctctaaacaagtctaggg-cgtttt-ttgttgtttgcttggaaaccattt-aactcatagattaccattatctcttgctccacacatctttg 18870813  T
Q  200 tttatttcattggtgtga 217  Q
    |   ||||||||||||||    
T  18870814 t---tttcattggtgtga 18870828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26287940 - 26287902
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatctt 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  26287940 cagattaggccatattggctgaactgggtcaacaatctt 26287902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26301197 - 26301159
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatctt 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  26301197 cagattaggccatattggctgaactgggtcaacaatctt 26301159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26313191 - 26313153
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatctt 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  26313191 cagattaggccatattggctgaactgggtcaacaatctt 26313153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 245
Target Start/End: Original strand, 31109630 - 31109872
Alignment:
Q  2 agattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtgtg 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||   | ||||||||||| |||||||||||||||||||||    
T  31109630 agattaggccatattggctgaactgggtcaacaatcttgttcggtgttttgttcttccttttcttgtttatcttgtttatgctttggaatctcttgtgtg 31109729  T
Q  102 gttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtt 201  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31109730 gttttgctatacactag-ttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctgcacacatcattgtt 31109828  T
Q  202 tatttcattggtgtgaaggtttgtttggaaccgaattcaaaaca 245  Q
    |||||||||||||||||||||| |||||||||| ||||| ||||    
T  31109829 tatttcattggtgtgaaggtttctttggaaccggattcacaaca 31109872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12406370 - 12406149
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||    
T  12406370 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttctttcttttaccgcttatcttgttt-tgctttggtatctctttgtg 12406273  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  12406272 tggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattg 12406173  T
Q  200 tttatttcattggtgtgaaggttt 223  Q
    ||||||||||||||||||||||||    
T  12406172 tttatttcattggtgtgaaggttt 12406149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12396950 - 12396729
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| | ||||||||||||||||||| |||||||| ||||||| |||    
T  12396950 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttcttccctttaccgcttatcttgttt-tgctttggtatctctttgtg 12396853  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  12396852 tggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattg 12396753  T
Q  200 tttatttcattggtgtgaaggttt 223  Q
    ||||||||||||||||||||||||    
T  12396752 tttatttcattggtgtgaaggttt 12396729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4866769 - 4866547
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||| |||| || |||    
T  4866769 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatctttttgtg 4866672  T
Q  100 tggtttt-gctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    ||||||| ||||||||||||  ||||  ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  4866671 tggtttttgctatacactagtctaggactgttttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcatt 4866572  T
Q  199 gtttatttcattggtgtgaaggttt 223  Q
    |||||||||||||||||||||||||    
T  4866571 gtttatttcattggtgtgaaggttt 4866547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 24024372 - 24024618
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgtttt-gttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||   ||||||||||||| ||||| |  | ||||| ||    
T  24024372 cagattaggccatattggctgaactgggtcaacaatcttgttcggtgtttttgttcttccttttcttgcttatcttgtttatgctt-gttagctctttgt 24024470  T
Q  99 gtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    |||||||||||||| ||||| | |||| | |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24024471 gtggttttgctatatactagtcataggct-gttttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcat 24024569  T
Q  198 tgtttatttcattggtgtgaagg-tttgtttggaaccgaattcaaaaca 245  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||| ||||    
T  24024570 tgtttatttcattggtgtgaaggttttctttggaaccggattcacaaca 24024618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19992352 - 19992130
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttc-ttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||| |  | ||||| ||    
T  19992352 cagattaggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgt 19992254  T
Q  99 gtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    ||||||||||||||||||||||||||| ||||| ||||||||  |||||||  |||||||||||||||||||||||||||||| ||||||||||||| ||    
T  19992253 gtggttttgctatacactagcttagggctgttt-gttgttgtaagcttggaagccatttgttctcattgattatcactatcacctgctccacacatcttt 19992155  T
Q  199 -gtttatttcattggtgtgaaggtt 222  Q
     ||||||||||||||||||||||||    
T  19992154 ggtttatttcattggtgtgaaggtt 19992130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 21812284 - 21812507
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt-cttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| |||||   || ||||| ||    
T  21812284 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttttgttcttttcttttaccgtttatcttgtttatgcttgttaa-ctctttgt 21812382  T
Q  99 gtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||||  ||||||| |||||| ||||| ||||||| ||||||||||||||| ||    
T  21812383 gtggttttgctatacactagcttagggctgttt-gttgttgttagcttggaagccatttgctctcatagattaccactatctcttgctccacacatcttt 21812481  T
Q  199 -gtttatttcattggtgtgaaggttt 223  Q
     |||||||||||||||||||||||||    
T  21812482 ggtttatttcattggtgtgaaggttt 21812507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 20357608 - 20357816
Alignment:
Q  4 attaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctc-ttgtgtgg 102  Q
    |||||||||||||||||||| ||||||||||||||| || ||| |||||||||| |||||   ||||||||||||  |||||||  ||||| ||||||||    
T  20357608 attaggccatattggctgaactgggtcaacaatcttctt-ggtattttgttcttccttttcttgcttatcttgtt--tgctttgttatctctttgtgtgg 20357704  T
Q  103 ttttgctatacactagcttagggttg-ttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtt 201  Q
    ||||||| ||||||||  ||||| || ||||||||||||| ||||||||||||||||  ||||| ||||| ||||||| ||||||||||||||| ||||     
T  20357705 ttttgctctacactagtctagggctgtttttgttgttgttagcttggagaccatttg-gctcatagattaccactatctcttgctccacacatctttgt- 20357802  T
Q  202 tatttcattggtgtga 217  Q
      ||||||||||||||    
T  20357803 --tttcattggtgtga 20357816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2058004 - 2057786
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttg----tttgtgctttggaatctc-t 95  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||  ||||||||||    ||| |||||||| ||||| |    
T  2058004 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttcttccttttattgcttatcttgtttttttttgctttggtatctctt 2057906  T
Q  96 tgtgtggttttgctatacactagcttagggttg-ttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacat 194  Q
    |||||||||||||| || || ||  |||||  | ||||||||||||| ||||||| ||||||||  ||||| ||||| ||||||| ||||||||||||||    
T  2057905 tgtgtggttttgctctaaacaagtctagggcggtttttgttgttgtttgcttggaaaccatttg-actcatagattaccactatctcttgctccacacat 2057807  T
Q  195 cattgtttatttcattggtgtga 217  Q
    | |||||  ||||||||||||||    
T  2057806 ctttgtt--tttcattggtgtga 2057786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16880112 - 16879889
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||||||||  ||||||||| || ||||||||| ||    |||  | ||||| |    
T  16880112 cagattaggccacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttgtatg---cttgttagctcttag 16880016  T
Q  98 tgtggttttgctatacacta-gcttagggttgttttgttgttg-ttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    ||||| |||||| |||| || ||||| || ||||||||||||| || |||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||    
T  16880015 tgtggatttgct-tacattaggctta-ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatc 16879918  T
Q  196 attg-tttatt-tcattggtgtgaaggtt 222  Q
     ||| |||||| |||||||||||||||||    
T  16879917 tttgatttattctcattggtgtgaaggtt 16879889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16884968 - 16884745
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||||||||  ||||||||| || ||||||||| ||    |||  | ||||| |    
T  16884968 cagattaggccacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttgtatg---cttgttagctcttag 16884872  T
Q  98 tgtggttttgctatacacta-gcttagggttgttttgttgttg-ttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    ||||| |||||| |||| || ||||| || ||||||||||||| || |||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||    
T  16884871 tgtggatttgct-tacattaggctta-ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatc 16884774  T
Q  196 attg-tttatt-tcattggtgtgaaggtt 222  Q
     ||| |||||| |||||||||||||||||    
T  16884773 tttgatttattctcattggtgtgaaggtt 16884745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 24261369 - 24261592
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||||||||  ||||||||| || ||||||||| ||    |||  | ||||| |    
T  24261369 cagattaggccacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttgtatg---cttgttagctcttag 24261465  T
Q  98 tgtggttttgctatacacta-gcttagggttgttttgttgttg-ttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    ||||| |||||| |||| || ||||| || ||||||||||||| || |||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||    
T  24261466 tgtggatttgct-tacattaggctta-ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatc 24261563  T
Q  196 attg-tttatt-tcattggtgtgaaggtt 222  Q
     ||| |||||| |||||||||||||||||    
T  24261564 tttgatttattctcattggtgtgaaggtt 24261592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 24266248 - 24266471
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||||||||  |||| |||| || ||||||||| ||    |||  | ||||| |    
T  24266248 cagattaggccacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcctttatcgtttatcttgtatg---cttgttagctcttag 24266344  T
Q  98 tgtggttttgctatacacta-gcttagggttgttttgttgttg-ttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    ||||| |||||| |||| || ||||| || ||||||||||||| || |||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||    
T  24266345 tgtggatttgct-tacattaggctta-ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatc 24266442  T
Q  196 attg-tttatt-tcattggtgtgaaggtt 222  Q
     ||| |||||| |||||||||||||||||    
T  24266443 tttgatttattctcattggtgtgaaggtt 24266471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1533502 - 1533709
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||    |||||| |||||||  ||||| | |||||| ||    
T  1533502 cagattaggccatattggctgaactgggtcaacaatcttatt-ggtgtgtttgttctttctttctt-gcttatattgtttg--ctttgtattctctt-tg 1533596  T
Q  100 tggttttgctatacactagcttagggttg-ttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    |||| ||||| ||||||||  | ||| || |||||||||||||| |||||| ||  ||| ||||||||||||| ||||||   |||||||||||||| ||    
T  1533597 tggtgttgctctacactagactggggctggttttgttgttgttg-cttggaaac--ttttttctcattgattaccactatattttgctccacacatcttt 1533693  T
Q  199 gtttatttcattggtgtga 217  Q
    ||   ||||||||||||||    
T  1533694 gt---tttcattggtgtga 1533709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 21639847 - 21639701
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||| ||| |||   ||||||||||||  ||||||| | |||||  ||    
T  21639847 cagattaggccatattggctgaactgggtcaacaatctt-tttggtgtgtttgttc-ttcctttcttgcttatcttgtt--tgctttgtattctct--tg 21639754  T
Q  100 tggttttgctatacactagcttagggttg-ttttgttgttgttggcttggagac 152  Q
    |||| ||||| ||||||||  ||||| || ||||||||||||| ||||||||||    
T  21639753 tggtgttgctctacactagactagggctgtttttgttgttgtt-gcttggagac 21639701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 21646044 - 21645899
Alignment:
Q  2 agattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtgt 100  Q
    |||||||||||||||||||||| ||||||||||||||| || ||||| ||||||| ||| |||   |||||||||||||||  |||| | |||||  |||    
T  21646044 agattaggccatattggctgaactgggtcaacaatctt-tttggtgtgtttgttc-ttcctttcttgcttatcttgtttgt--tttgtattctct--tgt 21645951  T
Q  101 ggttttgctatacactagcttagggttg-ttttgttgttgttggcttggagac 152  Q
    ||| ||||| ||||||||  ||||| || ||||||||||||| ||||||||||    
T  21645950 ggtgttgctctacactagactagggctgtttttgttgttgtt-gcttggagac 21645899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18408802 - 18408742
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttt 62  Q
    ||||||||||||||||||||||| ||||||||||||||  || ||||| ||||||||||||||    
T  18408802 cagattaggccatattggctgaactgggtcaacaatct--tttggtgtgtttgttctttcttt 18408742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18413679 - 18413619
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttt 62  Q
    ||||||||||||||||||||||| ||||||||||||||  || ||||| ||||||||||||||    
T  18413679 cagattaggccatattggctgaactgggtcaacaatct--tttggtgtgtttgttctttcttt 18413619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 28184544 - 28184297
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttctttt-accgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  28184544 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttctttctttttaccgcttatcttgtttatgctttggaatctcttgtg 28184446  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagacca--tttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    |||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  28184445 tggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctccacacatcat 28184346  T
Q  198 t-gtttatttcattggtgtgaaggtttgtttggaaccgaattcaaaaca 245  Q
    | |||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  28184345 tggtttatttcattggtgtgaaggtttgtttgaaaccggattcacaaca 28184297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 14737622 - 14737867
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt--gt 98  Q
    ||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||||||  ||    
T  14737622 cagattaggccatattggctgaactggatcaacaatcttct-cggtgttttgttctttcttttaccgcttatcttgttt-tgctttggtatctcttttgt 14737719  T
Q  99 gtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    ||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737720 gtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 14737819  T
Q  199 gtttatttcattggtgtgaaggtttgtttggaaccgaattcaaaacaa 246  Q
    ||||||||||||||||||||||||| |||| ||||| ||||| |||||    
T  14737820 gtttatttcattggtgtgaaggtttatttgaaaccggattcacaacaa 14737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 14742485 - 14742725
Alignment:
Q  4 attaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtgtgg 102  Q
    |||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||  ||||||| ||||||    
T  14742485 attaggtcatattggctgaactgggtcaacaatcttct-cggtgttttgttctttcttttaccgcttatcttgttt-tgctttgatatctctttgtgtgg 14742582  T
Q  103 ttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgttt 202  Q
    ||||||||||||||||  ||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14742583 ttttgctatacactagtctagggctgttttgttgttgtatgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgttt 14742682  T
Q  203 atttcattggtgtgaaggtttgtttggaaccgaattcaaaaca 245  Q
    ||||||||||||||||||||| |||| ||||| ||||| ||||    
T  14742683 atttcattggtgtgaaggtttatttgaaaccggattcacaaca 14742725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 22010743 - 22010960
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||| |||||||||||||| |||||||| ||||||| |||    
T  22010743 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttcttccttttatcgcttatcttgttt-tgctttggtatctctttgtg 22010840  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    ||||||||||||||||| |  |||||  | |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22010841 tggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattg 22010940  T
Q  200 tttatttcattggtgtgaag 219  Q
    ||||||||||||||||||||    
T  22010941 tttatttcattggtgtgaag 22010960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6438540 - 6438313
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttc-ttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||| |  | ||||| ||    
T  6438540 cagattaggccatattggctgaactgggacaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgt 6438442  T
Q  99 gtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||||  ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  6438441 gtggttttgctatacactagcttagggctgttt-gttgttgtttgcttggaagccattggttctcattgattaccactatcacttgctccacacatcatt 6438343  T
Q  199 gtttatttcattggtgtgaaggtttgtttg 228  Q
    |||||||||||||||||||||||| |||||    
T  6438342 gtttatttcattggtgtgaaggttcgtttg 6438313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 11857010 - 11856789
Alignment:
Q  4 attaggccatattggctgaattgggtcaacaatcttgttcggtgtttt---gttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||||   |||||| |||||| ||||| |||||||| |||||||| ||||||| |||    
T  11857010 attaggccatattggctgaactgggtcaacaatcttctt-ggtgtttttttgttcttccttttatcgcttgtcttgttt-tgctttggtatctctttgtg 11856913  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  11856912 tggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattg 11856813  T
Q  200 tttatttcattggtgtgaaggttt 223  Q
    ||||||||||||||||||||||||    
T  11856812 tttatttcattggtgtgaaggttt 11856789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 28155615 - 28155861
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttct-tttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||||| |  | ||||| ||    
T  28155615 cagattaggccacattggctgaactgggtcaacaatcttgttcggtgttttgttctttccatttaccgtttatcttgtttatgctt-gttagctcttagt 28155713  T
Q  99 gtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    ||||||||||||||||| || | || || ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28155714 gtggttttgctatacacaagtcata-ggctgttttgttgttgttagcttgaagaccatttgctctcattgattatcactatcacttgctccacacatcat 28155812  T
Q  198 tgtttatttcattggtgtgaagg-tttgtttggaaccgaattcaaaaca 245  Q
    |||||||| |||||||||||||| ||||||| |||||| ||||| ||||    
T  28155813 tgtttattgcattggtgtgaaggttttgtttagaaccggattcacaaca 28155861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6005456 - 6005234
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt--cttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||  |||||| || ||||||||| ||    |||  | ||||| |    
T  6005456 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttt-gttcttttccttttatcgtttatcttgtatgc---ttgttagctcttag 6005361  T
Q  98 tgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||| ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  6005360 tgtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 6005262  T
Q  197 tt-gtttatt-tcattggtgtgaaggtt 222  Q
    || ||||||| |||||||||||||||||    
T  6005261 ttggtttattctcattggtgtgaaggtt 6005234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16838783 - 16838561
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    ||||||| |||| |||||||||| |||||||||||||||| ||||||||| ||||  ||||||||| || ||||||||| ||    |||  | ||||| |    
T  16838783 cagattaagccacattggctgaactgggtcaacaatcttgctcggtgttt-gttcgttttcttttatcgtttatcttgtatgc---ttgttagctcttag 16838688  T
Q  98 tgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||| ||| |||||| | |||||||||||||| ||||| || |||||||  ||||| ||||||| ||||||||||||||||| ||||    
T  16838687 tgtggttttgctatacattaggcttaggct-gttttgttgttgttagcttgaaggccatttgcactcatagattatctctatcacttgctccacatatca 16838589  T
Q  197 tt-gtttatt-tcattggtgtgaaggtt 222  Q
    || ||||||| |||||||||||||||||    
T  16838588 ttggtttattctcattggtgtgaaggtt 16838561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 5343519 - 5343297
Alignment:
Q  2 agattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||  |||| |||| || ||||||||| ||    |||  | ||||| ||    
T  5343519 agattaggccacattggctgaactgggtcaacaatcttgctcggtgttt-gttcgttttcctttatcgtttatcttgtatgc---ttgttagctcttagt 5343424  T
Q  99 gtggtttt-gctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    |||||||| |||||||  ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  5343423 gtggtttttgctatactttaggcttaggct-gttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 5343325  T
Q  197 ttg-tttatt-tcattggtgtgaaggtt 222  Q
    |||  ||||| |||||||||||||||||    
T  5343324 ttgacttattctcattggtgtgaaggtt 5343297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33330491 - 33330715
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt-ctttt-accgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||| ||||||| ||||| |  | ||||||||||  ||||| |  | ||||| |    
T  33330491 cagattaggccacattggctgaactgggtcaacaatcttgcttggtgttt-gttcttttcttttcatggtttatcttgtta-tgctt-gttagctcttag 33330587  T
Q  98 tgtggtttt-gctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    ||||||||| |||||||| ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||||||||||    
T  33330588 tgtggtttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 33330686  T
Q  196 att-gtttatt-tcattggtgtgaaggtt 222  Q
    ||| ||||||| | |||||||||||||||    
T  33330687 attggtttattctaattggtgtgaaggtt 33330715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 33336115 - 33336212
Alignment:
Q  127 tgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 222  Q
    ||||||||||||||| | |||||| |||||||  ||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  33336115 tgttttgttgttgttagtttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 33336212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 30125944 - 30126063
Alignment:
Q  95 ttgtgtggttttgctatacactagcttagggttgtttt-gttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacaca 193  Q
    ||||||||||||||| ||||||||  ||||| |||||| ||||| ||| ||||||||||||||||  ||||| ||||||||||| | |||||||||||||    
T  30125944 ttgtgtggttttgctctacactagtctagggctgtttttgttgtagttagcttggagaccatttgg-ctcatagattatcactacctcttgctccacaca 30126042  T
Q  194 tcattgtttatttcattggtgtga 217  Q
    || ||||   ||||||||||||||    
T  30126043 tctttgt---tttcattggtgtga 30126063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5674828 - 5675036
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||| | || ||||| ||||||||||| |||   |||||| |||||  ||||||| | |||||| ||    
T  5674828 cagattaggccatattggctgaactgggtcaacaatc-tctttggtgtgtttgttctttc-tttcttgcttatattgtt--tgctttgtattctctt-tg 5674922  T
Q  100 tggttttgctatacactagcttaggg-ttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    |||| ||||| ||||||||  ||||| | |||||||||||||||  | ||| ||  ||| | ||| ||||||| |||||||  |||||||||||||| ||    
T  5674923 tggtgttgctctacactagactagggctggttttgttgttgttgcttgggaaac--tttttactctttgattaccactatcttttgctccacacatcttt 5675020  T
Q  199 gtttatttcattggtgtga 217  Q
    ||   ||||||||||||||    
T  5675021 gt---tttcattggtgtga 5675036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 22173241 - 22173484
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||| |||||||| ||||||| |||    
T  22173241 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttcttccttttaccgcttatcttattt-tgctttggtatctctttgtg 22173338  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  22173339 tggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattg 22173438  T
Q  200 tttatttcattggtgtgaaggtttgtttggaaccgaattcaaaaca 245  Q
    |||||||||||||||||||| |||||||| ||||| ||||| ||||    
T  22173439 tttatttcattggtgtgaagatttgtttgaaaccggattcacaaca 22173484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 18656474 - 18656227
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgtttt----gttctttcttttaccgcttatcttgtttgtgctttggaatctctt 96  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    |||||||| ||||||| ||||||||||||  |||||  | |||||    
T  18656474 cagattaggccatattggctgaactgggtcaacaatcttgttcagtgttttttttgttctttcctttaccgtttatcttgtttg--ctttgttagctctt 18656377  T
Q  97 -gtgtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
     |||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  18656376 tgtgtggtttttctatacactagcttagggctgttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatc 18656277  T
Q  196 attgtttatttcattggtgtgaaggtttgtttggaaccgaattcaaaacaa 246  Q
    ||||| | |||||||||||||||||||| |||||||||| ||||| |||||    
T  18656276 attgtat-tttcattggtgtgaaggtttctttggaaccggattcacaacaa 18656227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 7167283 - 7167072
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||    ||||||||||||| |||||||  ||||||| |||    
T  7167283 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttcttcctttctt-gcttatcttgtttatgctttgttatctctttgtg 7167186  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||| ||||||||  ||||| ||||||||||||||| ||||||| ||||||| | ||||| ||||| ||||||| ||||||||||||||| |||    
T  7167185 tggttttgctctacactagtctagggctgttttgttgttgtt-gcttggaaaccattt-tgctcatagattaccactatctcttgctccacacatctttg 7167088  T
Q  200 tttatttcattggtgtga 217  Q
    ||  ||||||||||||||    
T  7167087 tt--tttcattggtgtga 7167072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 2671644 - 2671855
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||    ||||||||||||| |||||||  ||||||| |||    
T  2671644 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttcttcctttctt-gcttatcttgttt-tgctttgttatctctttgtg 2671740  T
Q  100 tggttttgctatacactagcttagggttgtttt-gttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    ||||||| || ||||||||  ||||| |||||| ||||||||| ||||||||||||||||  ||||| ||||| ||||||| ||||||||||||||| ||    
T  2671741 tggtttttctctacactagactagggctgtttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctcttgctccacacatcttt 2671839  T
Q  199 gtttatttcattggtgtga 217  Q
    ||   ||||||||||||||    
T  2671840 gt---tttcattggtgtga 2671855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2677133 - 2677357
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt-ctttt-accgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||| ||||||| ||||| |  | ||||||||||  ||||| |  | ||||| |    
T  2677133 cagattaggccacattggctgaactgggtcaacaatcttgcttggtgttt-gttcttttcttttcatggtttatcttgtta-tgctt-gttagctcttag 2677229  T
Q  98 tgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||| ||| |||||| | |||||||||||||| |||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||    
T  2677230 tgtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgctctcatagattatctctatcacttgctccacacatca 2677328  T
Q  197 tt-gtttatt-tcattggtgtgaaggttt 223  Q
    || ||||||| ||||||||||||||||||    
T  2677329 ttggtttattctcattggtgtgaaggttt 2677357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 28503922 - 28504124
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||          ||||||| |||||||  ||||||| |||    
T  28503922 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttcttccttt----------cttgtttatgctttgttatctctttgtg 28504010  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||   |||| ||||||||||||||| ||||||| ||||||| ||||||| ||||||||||| |  ||||||||||||||||||    
T  28504011 tggttttgctatacactagtcaagggctgttttgttgttgtt-gcttggaaaccattt-ttctcatagattatcactaccttttgctccacacatcattg 28504108  T
Q  200 tttatttcattggtgtga 217  Q
    ||   |||||||||||||    
T  28504109 tt--attcattggtgtga 28504124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2672977 - 2673201
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt-ctttt-accgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||| ||||||| ||||| |  | ||||||||||  ||||| |  | ||||| |    
T  2672977 cagattaggccacattggctgaactgggtcaacaatcttgcttggtgttt-gttcttttcttttcatggtttatcttgtta-tgctt-gttagctcttag 2673073  T
Q  98 tgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||| ||| |||||| | |||||||||||||| |||||||| ||||||  |||||| ||||||| ||||||||||||||||||||||    
T  2673074 tgtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttactctcatagattatctctatcacttgctccacacatca 2673172  T
Q  197 tt-gtttatt-tcattggtgtgaaggttt 223  Q
    || ||||||| ||||||||||||||||||    
T  2673173 ttggtttattctcattggtgtgaaggttt 2673201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8512256 - 8512032
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgctt-atcttgtttgtgctttggaatctctt- 96  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||  |||| |||| || || ||||||| ||    |||  | |||||     
T  8512256 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttttgttcgttttcgtttatcgttttatcttgtatgc---ttgttaactctta 8512160  T
Q  97 gtgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    |||||||| ||||| ||| ||| |||||| | |||||||||||||| |||||||  ||||||| |||||| ||||||| |||||||||||||||||||||    
T  8512159 gtgtggttgtgctacacattaggcttaggct-gttttgttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatc 8512061  T
Q  196 attg-tttatt-tcattggtgtgaaggtt 222  Q
    |||| |||||| |||||||||||||||||    
T  8512060 attgatttattctcattggtgtgaaggtt 8512032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8517136 - 8516912
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgctt-atcttgtttgtgctttggaatctctt- 96  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||  |||| |||| || || ||||||| ||    |||  | |||||     
T  8517136 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttttgttcgttttcgtttatcgttttatcttgtatgc---ttgttaactctta 8517040  T
Q  97 gtgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    |||||||| ||||| ||| ||| |||||| | |||||||||||||| |||||||  ||||||| |||||| ||||||| |||||||||||||||||||||    
T  8517039 gtgtggttgtgctacacattaggcttaggct-gttttgttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatc 8516941  T
Q  196 attg-tttatt-tcattggtgtgaaggtt 222  Q
    |||| |||||| |||||||||||||||||    
T  8516940 attgatttattctcattggtgtgaaggtt 8516912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10207973 - 10207750
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt-ctttt-accgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||| ||||||| ||||| |  | ||||||||||  ||||| |  | ||||| |    
T  10207973 cagattaggccacattggctgaactgggtcaacaatcttgcttggtgttt-gttcttttcttttcatggtttatcttgtta-tgctt-gttagctcttag 10207877  T
Q  98 tgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||| ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  10207876 tgtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 10207778  T
Q  197 tt-gtttatt-tcattggtgtgaaggtt 222  Q
    || ||||||| |||||||||||||||||    
T  10207777 ttggtttattctcattggtgtgaaggtt 10207750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 24968143 - 24967957
Alignment:
Q  4 attaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-gtgt 100  Q
    |||| |||| |||||||||| |||||||||||||||| ||||||||| ||||  ||||||||| || ||||||||| ||    |||  | ||||| ||||    
T  24968143 attaagccacattggctgaactgggtcaacaatcttgctcggtgttt-gttcgttttcttttatcgtttatcttgtatgc---ttgttagctcttagtgt 24968048  T
Q  101 ggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccaca 191  Q
    |||||||||||||| ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||||||    
T  24968047 ggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccaca 24967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 8739121 - 8739333
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctc-ttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||| ||| |||   ||||||||||||| |||||||| ||||| |||||    
T  8739121 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttc-ttcctttcttgcttatcttgttt-tgctttggtatctctttgtg 8739217  T
Q  100 tgg-ttttgctatacactagcttagggttg-ttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    ||| ||||| | || || ||  |||||  | |||||||||| || ||||||| ||||||||  ||||| ||||| ||||||  ||||||||||||||| |    
T  8739218 tggtttttgttctaaacaagtctagggcggtttttgttgttatttgcttggaaaccatttg-actcatagattaccactatttcttgctccacacatctt 8739316  T
Q  198 tgtttatttcattggtgtga 217  Q
    |||   ||||||||||||||    
T  8739317 tgt---tttcattggtgtga 8739333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 9091359 - 9091571
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctc-ttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||| ||| |||   ||||||||||||| |||||||| ||||| |||||    
T  9091359 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttc-ttcctttcttgcttatcttgttt-tgctttggtatctctttgtg 9091455  T
Q  100 tgg-ttttgctatacactagcttagggttg-ttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    ||| ||||| | || || ||  |||||  | |||||||||| || ||||||| ||||||||  ||||| ||||| ||||||  ||||||||||||||| |    
T  9091456 tggtttttgttctaaacaagtctagggcggtttttgttgttatttgcttggaaaccatttg-actcatagattaccactatttcttgctccacacatctt 9091554  T
Q  198 tgtttatttcattggtgtga 217  Q
    |||   ||||||||||||||    
T  9091555 tgt---tttcattggtgtga 9091571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32475524 - 32475301
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||||||||  ||||||||| || ||||||||| ||    |||  | ||||| |    
T  32475524 cagattaggccacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttgtatg---cttgttagctcttag 32475428  T
Q  98 tgtggttttgctatacacta-gcttagggttgttttgttgttg-ttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    ||||| |||||| |||| || ||||| || ||||||||||||| || | |||||| |||||||  ||||| ||||| | ||||| |||||||||||||||    
T  32475427 tgtggatttgct-tacattaggctta-ggctgttttgttgttgattagtttggaggccatttgcactcatagattacctctatctcttgctccacacatc 32475330  T
Q  196 attg-tttatt-tcattggtgtgaaggtt 222  Q
     ||| |||||| |||||||||||||||||    
T  32475329 tttgatttattctcattggtgtgaaggtt 32475301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32480382 - 32480158
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||||||||  ||||||||| || ||||||||| ||    |||  | ||||| |    
T  32480382 cagattaggccacattggctgaactgggtcaacaatcttggttggtgttttgttcgttttcttttatcgtttatcttgtatg---cttgttagctcttag 32480286  T
Q  98 tgtggttttgctatacacta-gcttagggttgttttgttgttg-ttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    ||||| |||||| |||| || ||||| || ||||||||||||| || | |||||| |||||||  ||||| ||||| | ||||| |||||||||||||||    
T  32480285 tgtggatttgct-tacattaggctta-ggctgttttgttgttgattagtttggaggccatttgcactcatagattacctctatctcttgctccacacatc 32480188  T
Q  196 attg--tttatt-tcattggtgtgaaggtt 222  Q
     |||  |||||| |||||||||||||||||    
T  32480187 tttggatttattctcattggtgtgaaggtt 32480158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 8477401 - 8477193
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||| |||   ||||||||||||  ||||||| | | |||| ||    
T  8477401 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgtgtttgttctttc-tttcttgcttatcttgtt--tgctttgtattatctt-tg 8477307  T
Q  100 tggttttgctatacactagcttaggg-ttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    |||| ||| | ||||||||  ||||| | |||||||||||||||  | ||| ||  ||| | ||| ||||||| |||||||  |||||||||||||| ||    
T  8477306 tggtgttgttctacactagtctagggctggttttgttgttgttgcttgggaaac--tttttactctttgattaccactatcttttgctccacacatcttt 8477209  T
Q  199 gtttatttcattggtgtga 217  Q
    ||   ||||||||||||||    
T  8477208 gt---tttcattggtgtga 8477193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40372853 - 40372908
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctt 57  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  40372853 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttctt 40372908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 1305986 - 1305949
Alignment:
Q  2 agattaggccatattggctgaattgggtcaacaatctt 39  Q
    |||||||||||||||||||||| |||||||||||||||    
T  1305986 agattaggccatattggctgaactgggtcaacaatctt 1305949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26928649 - 26928709
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttt 62  Q
    ||||||||| ||||||||||||| ||||||||||||||  || ||||| ||||||||||||||    
T  26928649 cagattaggtcatattggctgaactgggtcaacaatct--tttggtgtgtttgttctttcttt 26928709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 40372980 - 40373064
Alignment:
Q  129 ttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttcattggtgtga 217  Q
    ||||| ||||||| ||||||| ||||||| | | ||||||||| ||||||| ||||||||||||| | ||||   ||||||||||||||    
T  40372980 ttttgatgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcattggtgtga 40373064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 45347863 - 45348090
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttc-ttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45347863 cagattaagccatattggctgaactgggtcaacaatcttct-cggtgttttgttctttccttttaccgcttatcttgtttgtgctttggaatctcttgtg 45347961  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||| ||||||||  ||||  ||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  45347962 tggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattg 45348061  T
Q  200 tttatttcattggtgtgaaggtttgtttg 228  Q
    |||||||||||||||||||||||| ||||    
T  45348062 tttatttcattggtgtgaaggtttctttg 45348090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 45357342 - 45357569
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttc-ttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45357342 cagattatgccatattggctgaactgggtcaacaatcttct-cggtgttttgttctttccttttaccgcttatcttgtttgtgctttggaatctcttgtg 45357440  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||| ||||||||  ||||  ||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  45357441 tggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattg 45357540  T
Q  200 tttatttcattggtgtgaaggtttgtttg 228  Q
    |||||||||||||||||||||||| ||||    
T  45357541 tttatttcattggtgtgaaggtttctttg 45357569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9224453 - 9224674
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||| ||||||| |||    
T  9224453 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatctctttgtg 9224550  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  9224551 tggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattg 9224650  T
Q  200 tttatttcattggtgtgaaggttt 223  Q
    ||||||||||||||||||||||||    
T  9224651 tttatttcattggtgtgaaggttt 9224674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9229240 - 9229461
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||| ||||||| |||    
T  9229240 cagattaggccatattggctgaactgggttaacaatcttct-cggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatctctttgtg 9229337  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  9229338 tggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattg 9229437  T
Q  200 tttatttcattggtgtgaaggttt 223  Q
    ||||||||||||||||||||||||    
T  9229438 tttatttcattggtgtgaaggttt 9229461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 5732704 - 5732457
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgtttt----gttctttcttttaccgcttatcttgtttgtgctttggaatctctt 96  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    |||||||| ||||||| ||||||||||||  |||||  | |||||    
T  5732704 cagattaggccatattggctgaactgggtcaacaatcttgttcagtgttttttttgttctttcctttaccgtttatcttgtttg--ctttgttagctctt 5732607  T
Q  97 -gtgtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
     |||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  5732606 tgtgtggttttactatacactagcttagggctgttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatc 5732507  T
Q  196 attgtttatttcattggtgtgaaggtttgtttggaaccgaattcaaaacaa 246  Q
    ||||| | |||||||||||||||||||| |||||||||| ||||| |||||    
T  5732506 attgtat-tttcattggtgtgaaggtttctttggaaccggattcacaacaa 5732457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 18855766 - 18855544
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttc-ttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||| |  | ||||| ||    
T  18855766 cagattaggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgt 18855668  T
Q  99 gtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  18855667 gtggttttgctatacactagcttagggctgttt-gttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcatt 18855569  T
Q  199 -gtttatttcattggtgtgaaggtt 222  Q
     ||||||||||||||||||||||||    
T  18855568 ggtttatttcattggtgtgaaggtt 18855544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 51520496 - 51520280
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||| |||||| | |||||||||||| |||||||  ||||||| ||     
T  51520496 cagattaggccatattggcagaactgggtcaacaatcttct-cggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgta 51520398  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  51520397 tggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattg 51520298  T
Q  200 tttatttcattggtgtga 217  Q
    ||||||||||||||||||    
T  51520297 tttatttcattggtgtga 51520280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 56146757 - 56146974
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| |||  |||||||||| | ||||||||||||||| |||||| | |||||||||||| |||||||  ||||||| |||    
T  56146757 cagattaggccatattggctgaactggaccaacaatcttct-cggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtg 56146855  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || |||||||||||| |||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  56146856 tggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattg 56146955  T
Q  200 tttatttcattggtgtgaa 218  Q
    |||||||||||||||||||    
T  56146956 tttatttcattggtgtgaa 56146974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3814063 - 3813835
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||||   |||||||||||||| ||||    ||||||||||||| ||||| |  | ||||| |||    
T  3814063 cagattaggccatattggctgaactgggtcaacaatcttgcatggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctctttgtg 3813966  T
Q  100 tggtttt-gctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    ||||||| || |||||||||  ||||  ||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  3813965 tggtttttgcgatacactagtctaggactgttttgttgttgtttgcttggagaccatttgctctcattgattaccactatcacttgctccacacatcatt 3813866  T
Q  199 -gtttatttcattggtgtgaaggtttgtttg 228  Q
     ||||||||||||||||||||||||| ||||    
T  3813865 ggtttatttcattggtgtgaaggtttctttg 3813835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 29760680 - 29760470
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||    ||||||||||||| |||||||   |||||| |||    
T  29760680 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttcttcctttctt-gcttatcttgttt-tgctttgttctctctttgtg 29760584  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||| ||||||||  ||||||||||||||||||||| ||||||| ||||||| |  | |||||||| ||||||| ||||||||||||||| |||    
T  29760583 tggttttgctctacactagtctagggttgttttgttgttgtt-gcttggaaaccattt-tgtttattgattaccactatctcttgctccacacatctttg 29760486  T
Q  200 tttatttcattggtgtga 217  Q
    ||  ||||||||||||||    
T  29760485 tt--tttcattggtgtga 29760470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 24741979 - 24741769
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||    ||||||||||||| |||||||| ||||||| |||    
T  24741979 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttcttcctttctt-gcttatcttgttt-tgctttggtatctctttgtg 24741883  T
Q  100 tggttttgctatacactagcttagggttgtttt-gttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    |||||||||| ||||||||  ||||| |||||| |||||||||| |||||| |||||||  | |||||||||| ||||||| ||||||||||||||| ||    
T  24741882 tggttttgctctacactagtctagggctgtttttgttgttgttg-cttggaaaccattttgt-tcattgattaccactatctcttgctccacacatcttt 24741785  T
Q  199 gtttatttcattggtgtga 217  Q
    ||   ||||||||||||||    
T  24741784 gt---tttcattggtgtga 24741769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28468587 - 28468625
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatctt 39  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  28468587 cagattaggtcatattggctgaactgggtcaacaatctt 28468625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35108 - 35329
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||| ||||||| |||    
T  35108 cagattaggccatattggctgaactgggttaacaatcttct-cggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatctctttgtg 35205  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  35206 tggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattg 35305  T
Q  200 tttatttcattggtgtgaaggttt 223  Q
    ||||||||||||||||||||||||    
T  35306 tttatttcattggtgtgaaggttt 35329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 15044722 - 15044483
Alignment:
Q  4 attaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtgtggt 103  Q
    |||||||||||||||||||| ||||||||||||||| || |||||||||||||| |||||   ||||||||||||| |||||||||||||||||||||||    
T  15044722 attaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttcttccttttcttgcttatcttgtttatgctttggaatctcttgtgtggt 15044624  T
Q  104 tttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgttta 203  Q
    |||||||||||||||  ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||  ||    
T  15044623 tttgctatacactagtctagggctgttttgttgttgttggtttggagaccatttgttctcattgattaccactatcacttgctctacacgtcattg--ta 15044526  T
Q  204 tttcattggtgtgaaggtttgtttggaaccgaattcaaaacaa 246  Q
    |||||||||||||||||||| |||||||||| ||||| |||||    
T  15044525 tttcattggtgtgaaggtttctttggaaccggattcacaacaa 15044483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 43592318 - 43592102
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||| | |||||||||||| |||||||  ||||||| |||    
T  43592318 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtg 43592220  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  43592219 tggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattg 43592120  T
Q  200 tttatttcattggtgtga 217  Q
    |||||||||||| |||||    
T  43592119 tttatttcattgatgtga 43592102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 43598763 - 43598547
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| |||  |||||||||| | ||||||||||||||| |||||| | |||||||||||| |||||||  ||||||| |||    
T  43598763 cagattaggccatattggctgaactggaccaacaatcttct-cggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtg 43598665  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || |||||||||||| |||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  43598664 tggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattg 43598565  T
Q  200 tttatttcattggtgtga 217  Q
    ||||||||||||||||||    
T  43598564 tttatttcattggtgtga 43598547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 43604255 - 43604039
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| |||  |||||||||| | ||||||||||||||| |||||| | |||||||||||| |||||||  ||||||| |||    
T  43604255 cagattaggccatattggctgaactggaccaacaatcttct-cggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtg 43604157  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || |||||||||||| |||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  43604156 tggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattg 43604057  T
Q  200 tttatttcattggtgtga 217  Q
    ||||||||||||||||||    
T  43604056 tttatttcattggtgtga 43604039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 43609747 - 43609531
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| |||  |||||||||| | ||||||||||||||| |||||| | |||||||||||| |||||||  ||||||| |||    
T  43609747 cagattaggccatattggctgaactggaccaacaatcttct-cggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtg 43609649  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || |||||||||||| |||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  43609648 tggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattg 43609549  T
Q  200 tttatttcattggtgtga 217  Q
    ||||||||||||||||||    
T  43609548 tttatttcattggtgtga 43609531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27445009 - 27444793
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    |||||||||| |||||| ||||| ||||||||||||||| | ||||||||||||||| |||||| | |||||||||||| |||||||  ||||||| |||    
T  27445009 cagattaggctatattgcctgaactgggtcaacaatcttct-cggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtg 27444911  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || | |||||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||    
T  27444910 tggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacacatcattg 27444811  T
Q  200 tttatttcattggtgtga 217  Q
    ||||||||||||||||||    
T  27444810 tttatttcattggtgtga 27444793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27449853 - 27449637
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    |||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||| |||||| | |||||||||||| |||||||  ||||||| |||    
T  27449853 cagattaggctatattggctgaactgggtcaacaatcttct-cggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtg 27449755  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || | |||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||| |||||||    
T  27449754 tggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacatatcattg 27449655  T
Q  200 tttatttcattggtgtga 217  Q
    ||||||||||||||||||    
T  27449654 tttatttcattggtgtga 27449637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28807618 - 28807843
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttc-ttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||| |  | ||||| |     
T  28807618 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttga 28807716  T
Q  99 gtggtttt--gctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||  ||||||||||||||||||| ||||| ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  28807717 gtggttttttgctatacactagcttagggctgttt-gttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatca 28807815  T
Q  197 tt-gtttatttcattggtgtgaaggttt 223  Q
    || |||||||||||||||||||||||||    
T  28807816 ttggtttatttcattggtgtgaaggttt 28807843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1457208 - 1457423
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    |||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||| ||||     |||||||||||| |||||||  ||||||| |||    
T  1457208 cagattaggccacattggctgaactgggtcaacaatcttct-cggtgttttgttcttcctttcttt-cttatcttgtttatgctttgttatctctttgtg 1457305  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    |||||||||||||||||||  ||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  1457306 tggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattg 1457405  T
Q  200 tttatttcattggtgtga 217  Q
    ||||||||||||||||||    
T  1457406 tttatttcattggtgtga 1457423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37561490 - 37561716
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttct-tttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||| ||||| |  | ||||| ||    
T  37561490 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttttgttctttccatttaccgtttatcttgtttatgctt-gttagctcttagt 37561588  T
Q  99 gtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    ||||||||||||||||| || | || || ||||||||||||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||||| |    
T  37561589 gtggttttgctatacacaagtcata-ggctgttttgttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctt 37561687  T
Q  198 t-gtttatt-tcattggtgtgaaggtttg 224  Q
    | ||||||| |||||||||||||||||||    
T  37561688 tggtttattatcattggtgtgaaggtttg 37561716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37556668 - 37556894
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttct-tttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||| ||||| |  | ||||| ||    
T  37556668 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttttgttctttccatttaccgtttatcttgtttatgctt-gttagctcttagt 37556766  T
Q  99 gtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    ||||||||||||||||| || | || || ||||||||||||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||||| |    
T  37556767 gtggttttgctatacacaagtcata-ggctgttttgttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctt 37556865  T
Q  198 t-gtttatt-tcattggtgtgaaggtttg 224  Q
    | ||||||| |||||||||||||| ||||    
T  37556866 tggtttattatcattggtgtgaagatttg 37556894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 30631445 - 30631231
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttt--taccgcttatcttgtttgtgctttggaatctct-tg 97  Q
    |||||||||||| |||||||||| || |||||||||||| || |||||||||||||| ||||  |||   ||||||||||| |||||||  |||| | |     
T  30631445 cagattaggccacattggctgaactgagtcaacaatcttctt-ggtgttttgttcttcctttcttac---ttatcttgtttatgctttgttatctatata 30631350  T
Q  98 tgtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    |||| ||||||||||||||||  ||||| |||||||||||||||| |||| | ||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  30631349 tgtgattttgctatacactagtctagggctgttttgttgttgttg-cttgaaaaccatttgttctcatagattaccactatctcttgctccacacatcat 30631251  T
Q  198 tgtttatttcattggtgtga 217  Q
    ||||||||||||| ||||||    
T  30631250 tgtttatttcatttgtgtga 30631231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2785414 - 2785192
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt--cttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||  |||||| || ||||||||| ||    |||  | ||||| |    
T  2785414 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttt-gttcttttccttttatcgtttatcttgtatgc---ttgttagctcttag 2785319  T
Q  98 tgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||| ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  2785318 tgtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 2785220  T
Q  197 tt-gtttatt-tcattggtgtgaaggtt 222  Q
    || ||||||| |||||||||||||||||    
T  2785219 ttggtttattctcattggtgtgaaggtt 2785192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31397039 - 31397261
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt-cttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||||  || ||| |||||| || ||||||||| ||    |||  | ||||| ||    
T  31397039 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgtttgtttgttttcttttatcgtttatcttgtatgc---ttgttagctcttagt 31397135  T
Q  99 gtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcat 197  Q
    ||||||||||| |||| ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||    
T  31397136 gtggttttgctttacattaggcttaggat-gttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcat 31397234  T
Q  198 tg-tttatt-tcattggtgtgaaggtt 222  Q
    || |||||| |||||||||||||||||    
T  31397235 tgatttattctcattggtgtgaaggtt 31397261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 31401899 - 31402118
Alignment:
Q  4 attaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-gtgt 100  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||||| ||||  ||||||||| || ||||||||| ||    |||  | ||||| ||||    
T  31401899 attaggccacattggctgaactgggtcaacaatcttgctcggtgttt-gttcgttttcttttatcgtttatcttgtatgc---ttgttagctcttagtgt 31401994  T
Q  101 ggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattg 199  Q
    ||||||||| |||| ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||||    
T  31401995 ggttttgctttacattaggcttaggct-gttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 31402093  T
Q  200 -tttatt-tcattggtgtgaaggtt 222  Q
     |||||| |||||||||||||||||    
T  31402094 atttattctcattggtgtgaaggtt 31402118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33791355 - 33791133
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt--cttttaccgcttatcttgtttgtgctttggaatctct-tg 97  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||  |||||| || ||||||||| ||    |||  | |||| |     
T  33791355 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttt-gttcttttccttttatcgtttatcttgtatgc---ttgttagctctata 33791260  T
Q  98 tgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||| ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  33791259 tgtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 33791161  T
Q  197 tt-gtttatt-tcattggtgtgaaggtt 222  Q
    || ||||||| |||||| ||||||||||    
T  33791160 ttggtttattctcattgatgtgaaggtt 33791133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33768218 - 33767996
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt--cttttaccgcttatcttgtttgtgctttggaatctct-tg 97  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||  |||||| || ||||| ||| ||    |||  | |||| |     
T  33768218 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttt-gttcttttccttttatcgtttatcctgtatgc---ttgttagctctata 33768123  T
Q  98 tgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||| ||| |||||| | |||||||||||||| ||||||||  ||||||  ||||| ||||||| ||||||||||||||||||||||    
T  33768122 tgtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggtcatttgcactcatagattatctctatcacttgctccacacatca 33768024  T
Q  197 tt-gtttatt-tcattggtgtgaaggtt 222  Q
    || ||||||| |||||| ||||||||||    
T  33768023 ttggtttattctcattgatgtgaaggtt 33767996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 31180253 - 31180138
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctc-ttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||| |||    |||||||||||| |||||||  ||||| |||||    
T  31180253 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttctttc-tttctttcttatcttgtttatgctttgttatctctttgtg 31180156  T
Q  100 tggttttgctatacacta 117  Q
    ||||||||||||||||||    
T  31180155 tggttttgctatacacta 31180138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 24135887 - 24135740
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||| |||||   ||||||||||||  ||||||| | | |||  ||    
T  24135887 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgtgtttgttcttccttttctagcttatcttgtt--tgctttgtattatct--tg 24135793  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagac 152  Q
    |||| ||||| ||||||||  ||||| ||||||||||||||| ||||||||||    
T  24135792 tggtgttgctctacactagtctagggctgttttgttgttgtttgcttggagac 24135740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 38192212 - 38192064
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||| ||| |||   ||||||||||||  ||||||| | |||||||||    
T  38192212 cagattaggccatattggctgaactgggtcaacaatctt-tttggtgtgtttgttc-ttcctttcttgcttatcttgtt--tgctttgtattctcttgtg 38192117  T
Q  100 tggttttgctatacactagcttagggttg-ttttgttgttgttggcttggagac 152  Q
    |||| ||||| ||||||||  ||||| || ||||||||||||| ||||||||||    
T  38192116 tggtgttgctctacactagtctagggctgtttttgttgttgtt-gcttggagac 38192064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 38219437 - 38219289
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||| ||| |||   ||||||||||||  ||||||| | |||||||||    
T  38219437 cagattaggccatattggctgaactgggtcaacaatctt-tttggtgtgtttgttc-ttcctttcttgcttatcttgtt--tgctttgtattctcttgtg 38219342  T
Q  100 tggttttgctatacactagcttagggttg-ttttgttgttgttggcttggagac 152  Q
    |||| ||||| ||||||||  ||||| || ||||||||||||| ||||||||||    
T  38219341 tggtgttgctctacactagtctagggctgtttttgttgttgtt-gcttggagac 38219289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 35387701 - 35387555
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| ||| |||   |||||||| |||  ||||||| | |||||  ||    
T  35387701 cagattaggccatattggctgaattgggtcaacaatctt-tttggtgtgtttgttc-ttcctttcttgcttatctcgtt--tgctttgtattctct--tg 35387608  T
Q  100 tggttttgctatacactagcttagggttg-ttttgttgttgttggcttggagac 152  Q
    |||  ||||| ||||||||  |||||||| ||||||||||||| ||||||||||    
T  35387607 tggagttgctctacactagactagggttgtttttgttgttgtt-gcttggagac 35387555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 44023919 - 44024164
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||  ||||||||||| ||||| |  | ||||| |||    
T  44023919 cagattaggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttcctttaccatttatcttgtttatgctt-gttagctctttgtg 44024017  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt- 198  Q
    |||||||||||||||||||||||||| ||||| ||||||||| |||||||  ||||||||||||||||||||||||||||| |||||||||||||||||     
T  44024018 tggttttgctatacactagcttagggctgttt-gttgttgtttgcttggaagccatttgttctcattgattatcactatcagttgctccacacatcattg 44024116  T
Q  199 gtttatttcattggtgtgaaggtttgtttggaaccgaattcaaaacaa 246  Q
    ||||||||||||||||||||||||| ||||||| || ||||| |||||    
T  44024117 gtttatttcattggtgtgaaggtttatttggaatcggattcacaacaa 44024164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 39445539 - 39445291
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttc-ttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||| |  | ||||| ||    
T  39445539 cagattaggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgt 39445441  T
Q  99 gtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||||  |||||||||| ||||||||||||||||||||||||||||||||||||    
T  39445440 gtggttttgctatacactagcttagggctgttt-gttgttgtttgcttggaagccatttgttcacattgattatcactatcacttgctccacacatcatt 39445342  T
Q  199 -gtttatttcattggtgtgaaggtttgtttg--gaaccgaattcaaaacaa 246  Q
     |||||||||||||||||||||||| |||||  |||||| ||||| |||||    
T  39445341 ggtttatttcattggtgtgaaggttcgtttgtagaaccggattcacaacaa 39445291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 25445135 - 25445363
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttc-ttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||||||||||  |||| |  | ||||| ||    
T  25445135 cagattaggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttacgctt-gttagctctttgt 25445233  T
Q  99 gtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||||  |||||||||||||||||||||||||||| ||||||||||||||||||    
T  25445234 gtggttttgctatacactagcttagggctgttt-gttgttgtttgcttggaagccatttgttctcattgattatcactatcgcttgctccacacatcatt 25445332  T
Q  199 -gtttatttcattggtgtgaaggtttgtttg 228  Q
     |||||||||||||||||||||||| |||||    
T  25445333 ggtttatttcattggtgtgaaggttcgtttg 25445363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1055057 - 1055279
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttc-ttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||| |  | ||||| ||    
T  1055057 cagattaggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgt 1055155  T
Q  99 gtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    ||||||||||||||||||||||||||| ||||| ||||||||  |||||||   ||||||||| ||||||||||||||||||||||||||||||||||||    
T  1055156 gtggttttgctatacactagcttagggctgttt-gttgttgtaagcttggaagacatttgttcacattgattatcactatcacttgctccacacatcatt 1055254  T
Q  199 -gtttatttcattggtgtgaaggtt 222  Q
     ||||||||||||||||||||||||    
T  1055255 ggtttatttcattggtgtgaaggtt 1055279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41398275 - 41398031
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||  ||||||||||||||| | ||||||||||||||| |||      |||||||||||| |||||||| ||||||| |||    
T  41398275 cagattaggccatattggctgacctgggtcaacaatcttct-cggtgttttgttcttcctt------cttatcttgtttatgctttggtatctctttgtg 41398183  T
Q  100 tggtttt--gctatacactagcttagggttgttttgttgttgttg---gcttggagaccatttgttctcattgattatcactatcacttgctccacacat 194  Q
    |||||||  |||||||||||| |||||| ||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41398182 tggttttttgctatacactag-ttagggctgttttgttgttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctccacacat 41398084  T
Q  195 catt-gtttatttcattggtgtgaaggtttgtttggaaccgaattcaaaacaa 246  Q
     ||| ||||||||||||||||||||||||| |||||||||| ||||| |||||    
T  41398083 aattggtttatttcattggtgtgaaggtttctttggaaccggattcacaacaa 41398031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 41386646 - 41386543
Alignment:
Q  143 gcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt-gtttatttcattggtgtgaaggtttgtttggaaccgaattcaa 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||     
T  41386646 gcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcac 41386547  T
Q  242 aaca 245  Q
    ||||    
T  41386546 aaca 41386543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 24787422 - 24787624
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctc-ttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| |||||   ||||||||||||  |||||||  ||||| |||||    
T  24787422 cagattaggccatattggctgaactgggtcaacaatcttctt-ggtgttttgttcttccttttcttgcttatcttgtt--tgctttgttatctctttgtg 24787518  T
Q  100 tggttttgctatacactagcttagggttg--ttttgttgttgttg--gcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    |||||||||| ||||  ||  ||||| ||  ||||||||||||||  ||||||| ||||||| | |||||| |||| ||||||| |||||||||||||||    
T  24787519 tggttttgctctacataagtctagggctgttttttgttgttgttgttgcttggaaaccattt-tgctcatttattaccactatctcttgctccacacatc 24787617  T
Q  196 attgttt 202  Q
     ||||||    
T  24787618 tttgttt 24787624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43988510 - 43988734
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttcttt-cttttaccgctt--atcttgtttgtgctttggaatctctt- 96  Q
    |||||||||||| |||||||||| ||||| |||||||||| | ||||||||||||||| |||||   | ||  ||||||| ||    |||  | |||||     
T  43988510 cagattaggccacattggctgaactgggtaaacaatcttgcttggtgttttgttcttttcttttcatggttttatcttgtatgc---ttgttagctctta 43988606  T
Q  97 gtgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    |||||||| ||||||||| ||| |||||| | |||||||||||||| |||||||  ||||||| |||||| ||||||| |||||||||||||||||||||    
T  43988607 gtgtggttgtgctatacattaggcttaggct-gttttgttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatc 43988705  T
Q  196 attg-tttatt-tcattggtgtgaaggtt 222  Q
    |||| |||||| ||||||| |||||||||    
T  43988706 attgatttattctcattggcgtgaaggtt 43988734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 24202827 - 24202973
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||| ||||    ||||||||||||||  ||||| | |||||||||    
T  24202827 cagattaggccatattggctgaactgggtcaacaatcttttt-ggtgtgtttgttcttcctttctt-gcttatcttgtttg--ctttgtattctcttgtg 24202922  T
Q  100 tggttttgctatacactagcttagggttgttttgttgttgttggcttggagac 152  Q
      || ||||| |||||||| |||||| ||||||||||||||| ||||||||||    
T  24202923 --gtgttgctctacactagtttagggctgttttgttgttgtttgcttggagac 24202973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 41390620 - 41390485
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctctt-gtg 99  Q
    ||||||||||||||||||||||  ||||||||||||||| | || |||||||||||| |||      |||||||||||| |||||||  ||||||| |||    
T  41390620 cagattaggccatattggctgatctgggtcaacaatcttct-cgatgttttgttcttcctt------cttatcttgtttatgctttgatatctctttgtg 41390528  T
Q  100 tggtttt--gctatacactagcttagggttgttttgttgttgtt 141  Q
    |||||||  |||||||||||| |||||| |||||||||||||||    
T  41390527 tggttttttgctatacactag-ttagggctgttttgttgttgtt 41390485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 9688 - 9930
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtgt 100  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||    ||||||||||||| ||||| |  | |||||||||    
T  9688 cagattaggccatattggctgaactgggtcaacaatcttct-cggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagctcttgtgt 9784  T
Q  101 ggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt-g 199  Q
    |||||||||||| |||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  9785 ggttttgctatatactagcttagggctgttttgttgttgtttggttggagaccatttgctctcattgattatcactatcacttgctccacacatcattgg 9884  T
Q  200 tttatttcattggtgtgaaggtttgtttggaaccgaattcaaaaca 245  Q
    ||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  9885 tttatttcattggtgtgaaggtttgtttgaaaccggattcacaaca 9930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 28 - 166
Alignment:
Q  97 gtgtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||| ||||||||||      |||||||||||||||||||||    
T  28 gtgtggttttgctatacactagcttagggctgttttgttgttgtttacttggagaccatttgctctcattgat------tatcacttgctccacacatca 121  T
Q  197 tt-gtttatttcattggtgtgaaggtttgtttggaaccgaattca 240  Q
    || |||||||| ||||||||||||||||||||| ||||| |||||    
T  122 ttggtttatttaattggtgtgaaggtttgtttgaaaccggattca 166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 402 - 154
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttc-ttttaccgcttatcttgtttgtgctttggaatctctt-gt 98  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||| |  | ||||| ||    
T  402 cagattaggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgctt-gttagctctttgt 304  T
Q  99 gtggttttgctatacactagcttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt 198  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||||  |||||||||||||||||||||||| ||||||||||||||||||| ||    
T  303 gtggttttgctatacactagcttagggctgttt-gttgttgtttgcttggaagccatttgttctcattgattatcaccatcacttgctccacacatcttt 205  T
Q  199 -gtttatttcattggtgtgaaggtttgtttg--gaaccgaattcaaaacaa 246  Q
     |||||||||||||||||||||||| |||||  |||||| ||||| |||||    
T  204 ggtttatttcattggtgtgaaggttcgtttgtagaaccggattcacaacaa 154  T

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Target: scaffold0127 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 34136 - 34239
Alignment:
Q  143 gcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt-gtttatttcattggtgtgaaggtttgtttggaaccgaattcaa 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||     
T  34136 gcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtgaaggtttctttggaaccggattcac 34235  T
Q  242 aaca 245  Q
    ||||    
T  34236 aaca 34239  T

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Target: scaffold0197 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 19211 - 19433
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| | |||||||| |||||||||||||||| ||||||||| ||||  ||||||||| || ||||||||| ||    |||  | ||||| |    
T  19211 cagattaggccacaatggctgaactgggtcaacaatcttgctcggtgttt-gttcgttttcttttatcgtttatcttgtatgc---ttgttagctcttag 19306  T
Q  98 tgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||| ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  19307 tgtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 19405  T
Q  197 ttg-tttatt-tcattggtgtgaaggtt 222  Q
    ||| |||||| |||||||||||||||||    
T  19406 ttgatttattctcattggtgtgaaggtt 19433  T

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Target: scaffold0197; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14355 - 14578
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||||||||  ||||||||| || ||||||||| ||    |||  | ||||| |    
T  14355 cagattaggccacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttgtatg---cttgttagctcttag 14451  T
Q  98 tgtggttttgctatacacta-gcttagggttgttttgttgttg-ttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    ||||| |||||| |||| || ||||| || ||||||||||||| || |||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||    
T  14452 tgtggatttgct-tacattaggctta-ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatc 14549  T
Q  196 attg-tttatt-tcattggtgtgaaggtt 222  Q
     ||| |||||| |||||||||||||||||    
T  14550 tttgatttattctcattggtgtgaaggtt 14578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 149002 - 149224
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||  |||| |||| || ||||||||| ||    |||  | ||||| |    
T  149002 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttt-gttcgttttcctttatcgtttatcttgtatgc---ttgttagctcttag 149097  T
Q  98 tgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||| ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  149098 tgtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 149196  T
Q  197 ttg-tttatt-tcattggtgtgaaggtt 222  Q
    ||| |||||| |||||||||||||||||    
T  149197 ttgatttattctcattggtgtgaaggtt 149224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2297 - 2519
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||  |||| |||| || ||||||||| ||    |||  | ||||| |    
T  2297 cagattaggccacattggctgaactgggtcaacaatcttgctcggtgttt-gttcgttttcctttatcgtttatcttgtatgc---ttgttagctcttag 2392  T
Q  98 tgtggttttgctatacactag-cttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 196  Q
    ||||||||||||||||| ||| |||||| | |||||||||||||| |||||||| |||||||  ||||| |||||||  |||||||||||||||||||||    
T  2393 tgtggttttgctatacattaggcttaggct-gttttgttgttgttagcttggaggccatttgcactcatggattatctttatcacttgctccacacatca 2491  T
Q  197 ttg-tttatt-tcattggtgtgaaggtt 222  Q
    ||| |||||| |||||||||||||||||    
T  2492 ttgatttattctcattggtgtgaaggtt 2519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 300 - 506
Alignment:
Q  7 aggccatattggctgaattgggtcaacaatcttgttcggtgttttgttctttcttt-taccgcttatcttgtttgtgctttggaatctctt-gtgtggtt 104  Q
    ||||||||||||||||| | ||||||||||||| || ||||||||||||||||||| ||  ||||||||||||| ||||||   ||||||| ||||||||    
T  300 aggccatattggctgaactaggtcaacaatcttctt-ggtgttttgttctttctttcta--gcttatcttgttt-tgctttattatctctttgtgtggtt 395  T
Q  105 ttgctatacactagcttagggttgttttgttgttgttg--gcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgttt 202  Q
    |||||   |||||| |||||| |||||| |||||||||  ||||||| ||||||| | ||||| ||||| ||||||| ||||||||||||||| ||||      
T  396 ttgctcctcactagtttagggctgtttt-ttgttgttgttgcttggaaaccatttttgctcatagattaccactatctcttgctccacacatctttgt-- 492  T
Q  203 atttcattggtgtga 217  Q
     ||||||||||||||    
T  493 -tttcattggtgtga 506  T

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Target: scaffold0009 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 182010 - 182233
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgttttgttc--tttcttttaccgcttatcttgtttgtgctttggaatctctt-g 97  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||||||||  ||||||||| || ||||||||| ||    |||  | ||||| |    
T  182010 cagattaggccacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttgtatg---cttgttagctcttag 182106  T
Q  98 tgtggttttgctatacacta-gcttagggttgttttgttgttg-ttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 195  Q
    ||||| |||||| |||| || ||||| || ||||||||||||| || |||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||    
T  182107 tgtggatttgct-tacattaggctta-ggctgttttgttgttgattagcttggaggccatttgcactcatagattacctctatctcttgctccacacatc 182204  T
Q  196 attg-tttatt-tcattggtgtgaaggtt 222  Q
     ||| |||||| |||||||||||||||||    
T  182205 tttgatttattctcattggtgtgaaggtt 182233  T

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Target: scaffold0479 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 13233 - 13140
Alignment:
Q  156 ttgttctcattgattatcactatcacttgctccacacatcatt-gtttatttcattggtgtgaaggtttgtttg--gaaccgaattcaaaacaa 246  Q
    |||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||| |||||  |||||| ||||| |||||    
T  13233 ttgttctcattgattatcactatcacttgctccacatatctttggtttatttcattggtgtgaaggttcgtttgtagaaccggattcacaacaa 13140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 18010 - 18157
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatcttgttcggtgt-tttgttctttcttttaccgcttatcttgtttgtgctttggaatctcttgtg 99  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||| ||| |||   ||||||||||||  ||||||| | |||||  ||    
T  18010 cagattaggccatattggctgaactgggtcaacaatctt-tttggtgtgtttgttc-ttcctttcttgcttatcttgtt--tgctttgtattctct--tg 18103  T
Q  100 tggttttgctatacactagcttagggttg--ttttgttgttgttggcttggagac 152  Q
    |||| ||||| ||||||||  ||||| ||  ||||||||||||| ||||||||||    
T  18104 tggtgttgctctacactagtctagggctggtttttgttgttgtt-gcttggagac 18157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24103 - 24141
Alignment:
Q  1 cagattaggccatattggctgaattgggtcaacaatctt 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  24103 cagattaggccatattggctgaactgggtcaacaatctt 24141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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