View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_44 (Length: 280)
Name: NF18417_low_44
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 24366534 - 24366799
Alignment:
| Q |
1 |
attctaaatttgtcatgttaaaattcaaatttagagatgatcaagtaaatgacaaaa-aattataagcagcagagcgaatcggatatgtatggacgaata |
99 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24366534 |
attctaaatttgtcatgttaaagttcaaatttagagatgatcaagtaaatgacaaaaaaattataagcagcagagcaaatcggatatgtatggacgaata |
24366633 |
T |
|
| Q |
100 |
tattcagctggtcctattctatgtgaacaaaactgatatggacagcatgaaataacaaaatgaaattgggttcattgcaatttagacactagcctagaat |
199 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24366634 |
tattcagctggtcctattctatgtgaacaaatctgatatggacagcatgaaataacaaaatgaaattgggttcattgcaatttagacactagcctagaat |
24366733 |
T |
|
| Q |
200 |
gtcacaaagaagtcttaacctactccataacaggaaacctctcctatgggatcaaaatctaaaaat |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24366734 |
gtcacaaagaagtcttaacctactccataacaggaaacctctcctatgggatcaaaatctaaaaat |
24366799 |
T |
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