View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_45 (Length: 277)
Name: NF18417_low_45
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 40392038 - 40391789
Alignment:
| Q |
15 |
aaaaactaaggttagatcaataatgttctatcat-ctttaagtcaaccaaccaattcactattatgtaacaacacaattgttggcaacattgtttcgaga |
113 |
Q |
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| T |
40392038 |
aaaaactaaggttagatcaataatgttctatcatgctttaggtcaaccaaccaattcattattatgtaacaacacaattgttggcaacattgtttcgaga |
40391939 |
T |
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| Q |
114 |
aacagctgcatccaatgtcgtcaccatcaaaccaaagaacgcgaaatctatgagcacgtcacaatgttcgttctaattcttgtatgtccccaaaagcaac |
213 |
Q |
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| T |
40391938 |
aacagctgcatccaatgtcgtcgccatcaaaccaaagaacgcgaaatctatgagcccgtcacaatgttcgttctaattcttgtatgtccccaaaagcaac |
40391839 |
T |
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| Q |
214 |
tgttacttgtataagttcatcacaatcttgattttaaatcctcatctgtg |
263 |
Q |
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| T |
40391838 |
tgttacttgtataagttcatcacaatcttgattttaaatcctcatctgtg |
40391789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 263
Target Start/End: Complemental strand, 40380714 - 40380448
Alignment:
| Q |
4 |
caaatgaggataaaaactaagg------ttagatcaataatgttctatcatctttaag-tcaaccaaccaattcactattatgtaacaacacaattgttg |
96 |
Q |
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| T |
40380714 |
caaatgaggataaaaactaaggacagtcttagatcaataatgttctatcatgcttgagatcaaccaaccaatccactattatgtaacaacacaattatta |
40380615 |
T |
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| Q |
97 |
gcaacattgtttcgagaaacagctgcatccaatgtcgtcaccatcaaaccaaagaacgcgaaatctatgagcacgtcacaatgttcgttctaattcttgt |
196 |
Q |
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| T |
40380614 |
gcaacattgtttcgagaaacagctgcatccaatgtcgtcaccatcaaaccaaagaacgcgaaatctatgagcccgtcacaatgttcgttctaattcttgt |
40380515 |
T |
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| Q |
197 |
atgtccccaaaagcaactgttacttgtataagttcatcacaatcttgattttaaatcctcatctgtg |
263 |
Q |
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| T |
40380514 |
atgtccccaaaagcaactgttacttgtataagttcatcacaatcttgattttaaatcctcatctgtg |
40380448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 41054416 - 41054542
Alignment:
| Q |
26 |
ttagatcaataatgttctatcat-ctttaagtcaaccaaccaattcactattatgtaacaacacaattgttggcaacattgtttcgagaaacagctgcat |
124 |
Q |
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|||||||||||||||||| |||| ||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| || |||||||| |
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| T |
41054416 |
ttagatcaataatgttctctcatgcttcaggtcaaccaaccaatccactattatgtaacaacacaattattggcaacattgttttgagcaaaagctgcat |
41054515 |
T |
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| Q |
125 |
ccaatgtcgtcaccatcaaaccaaaga |
151 |
Q |
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| T |
41054516 |
ccattgtcatcgccatcaaaccaaaga |
41054542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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