View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_47 (Length: 274)
Name: NF18417_low_47
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 46666542 - 46666803
Alignment:
| Q |
1 |
atccggcaattcttgcatcacagactgcttgtatgtctatcggttaatccaattagattatgttaattaagctttaattaattcttgtatatttctatga |
100 |
Q |
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| T |
46666542 |
atccggcaattcttgcatcacagactgcttgtatgtctatcggttaatccaattagattatgttaattaagctttaattaattcttgtatatttctatga |
46666641 |
T |
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| Q |
101 |
tatatata--------agattgtgagttatttttgctagacagttttgtagtttaaataaacttgcgtacaaatttttggttttccagactctcacaatg |
192 |
Q |
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| T |
46666642 |
tatatatatatatataagattg--agttatttttgctagacagttttgtagtttaaataaacttgcgtacaaatttttggttttccagactctcacaatg |
46666739 |
T |
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| Q |
193 |
atgttgaagcattagcagagctttttaagagcatcaacaattcaactgtcgctaatggagaaat |
256 |
Q |
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| T |
46666740 |
atgttgaagcattagcagagctttttaagagcatcaacaattcaactgtcgctaatggagaaat |
46666803 |
T |
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