View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_48 (Length: 268)
Name: NF18417_low_48
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 40392126 - 40392369
Alignment:
| Q |
11 |
atgaactaagggataatgatgcttactagttctgcttattaagcacaaaagatattttaatttatttgcatctacattgttgtctttgttcaatggcagc |
110 |
Q |
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| T |
40392126 |
atgaattaagggataatgatgcttactagttctgcttattaagcacaaaagatattttaatttatttgcatctacattgttgtctttgttcaatggcaga |
40392225 |
T |
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| Q |
111 |
gtctaatgtcgatctcgatcacttcatac-nnnnnnnngagcaatgatggtgtattgctagtaagcaggattttctacataactttttcagcatatgact |
209 |
Q |
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| T |
40392226 |
gtctaatgtcgatctcgatcacttcatacaaaaaaaaagagcaatgattgtgtattgctagtaagcaggattttctacataactttttcagcatatgact |
40392325 |
T |
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| Q |
210 |
tgaatcatctagagttatatcgaatcattggtattgttattact |
253 |
Q |
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| T |
40392326 |
tgaatcatctagagttatatcgaatcattggcattgttattact |
40392369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 40380818 - 40380939
Alignment:
| Q |
82 |
ctacattgttgtctttgttcaat-ggcagcgtctaatgtcgatctcgatcacttcatacnnnnnnnngagcaatgatggtgtattgctagtaagcaggat |
180 |
Q |
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| T |
40380818 |
ctacattgttgtctttgttcatttggcagattctaatgtcgatctcg----cttcatacgaaaaaaagaacaatgatggtgtattgctagcaagaaggat |
40380913 |
T |
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| Q |
181 |
tttctacataactttttcagcatatg |
206 |
Q |
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| T |
40380914 |
tttctaaataactttttcagcatatg |
40380939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 41051998 - 41051933
Alignment:
| Q |
188 |
ataactttttcagcatatgacttgaatcatctagagttatatcgaatcattggtattgttattact |
253 |
Q |
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| T |
41051998 |
ataattttttcagcatatgactttaatgatctcgagttctatcaaatcattggcgctgttattact |
41051933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 41052133 - 41052100
Alignment:
| Q |
69 |
aatttatttgcatctacattgttgtctttgttca |
102 |
Q |
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| T |
41052133 |
aatttatttgcatatacattgttgtctttgttca |
41052100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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