View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_50 (Length: 243)
Name: NF18417_low_50
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_50 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38725086 - 38725314
Alignment:
| Q |
1 |
tgagaggcttttgcatagtttactacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggag |
100 |
Q |
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| T |
38725086 |
tgagaggcttttgcatagtttactacctttagtcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggag |
38725185 |
T |
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| Q |
101 |
aattttggagagttgaattaagcaagagtgctccactagattcaacaaagaaggtttgcatcc----aataacttggagttccataattctgataagagt |
196 |
Q |
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| T |
38725186 |
aattttggagagttgaattaagcaagagtgctccactagattcaacaaagaaggtttgcatccaattaataacttggagttccataattctgataagagt |
38725285 |
T |
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| Q |
197 |
taaaaacaattgcgtctggccaccacgtc |
225 |
Q |
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| T |
38725286 |
taaaaacaattgcgtctggccaccacgtc |
38725314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 32162 - 31971
Alignment:
| Q |
24 |
tacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagc |
123 |
Q |
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| T |
32162 |
tacctttactcttagataattcttcccatcttgagaatttttatactcaattgcggatgcaacaattgagctagaagaattttgaagagttgaattaagc |
32063 |
T |
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| Q |
124 |
aagagtgctccactagattcaacaaagaaggtttgcatccaataacttggagttccataattctgataagagttaaaaacaattgcgtctgg |
215 |
Q |
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| T |
32062 |
aatgttgctccactagattcaataaagagntgttgtagccaataacttggagttccataattctgataagagttaaaaacaattgcatctgg |
31971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 34165341 - 34165150
Alignment:
| Q |
24 |
tacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagc |
123 |
Q |
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| T |
34165341 |
tacctttactcttagataattcttcccatcttgagaatttttatactcaattgcggatgcaacaattgagctagaagaattttgaagagttgaattaagc |
34165242 |
T |
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| Q |
124 |
aagagtgctccactagattcaacaaagaaggtttgcatccaataacttggagttccataattctgataagagttaaaaacaattgcgtctgg |
215 |
Q |
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| T |
34165241 |
aatgttgctccactagattcaataaagagttgttgtagccaataacttggagttccataattctgataagagttaaaaacaattgcatctgg |
34165150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 34171838 - 34171647
Alignment:
| Q |
24 |
tacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagc |
123 |
Q |
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| T |
34171838 |
tacctttactcttagataattcttcccatcttgagaatttttatactcaattgcggatgcaacaattgagctagaagaattttgaagagttgaattaagc |
34171739 |
T |
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| Q |
124 |
aagagtgctccactagattcaacaaagaaggtttgcatccaataacttggagttccataattctgataagagttaaaaacaattgcgtctgg |
215 |
Q |
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| T |
34171738 |
aatgttgctccactagattcaataaagagttgttgtagccaataacttggagttccataattctgataagagttaaaaacaattgcatctgg |
34171647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 34215435 - 34215251
Alignment:
| Q |
24 |
tacctttactcttagataatttttcccatcttgagaatttttatactgaattgcggatgcaacaactgaataaggagaattttggagagttgaattaagc |
123 |
Q |
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| T |
34215435 |
tacctttactcttagataattcttcccatcttgagaatttttatactcaattgcggatgcaacaattgagctagaagaattttgaagagttgaattaagc |
34215336 |
T |
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| Q |
124 |
aagagtgctccactagattcaacaaagaaggtttgcatccaataacttggagttccataattctgataagagttaaaaacaattg |
208 |
Q |
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| T |
34215335 |
aatgttgctccactagattcaataaagagttgttgtagccaataacttggagttccataattctgataagagttaaaaacaattg |
34215251 |
T |
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