View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18417_low_55 (Length: 232)
Name: NF18417_low_55
Description: NF18417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18417_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31607810 - 31607590
Alignment:
| Q |
1 |
cgacgaagagggagcctcattctttctccatcaccccataatacataagcttcttccccatgagcagcatcatcaccaacctcaagctcttcttcttgca |
100 |
Q |
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| T |
31607810 |
cgacgaagagggagccgcattctttctccatcaccccataatacataagcttcttccccatgagcagcatcatcaccaacctcaaggtcttcttcttgca |
31607711 |
T |
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| Q |
101 |
ttcgaagattcacaaagcgatttaaaagaatacaaatcagactagtaataacaacattccaaatagtaataaaaactgctcctaataattggtaccacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607710 |
ttcgaagattcacaaagcgatttaaaagaatacaaatcagactagtaataacaacattccaaatagtaataaaaactgctcctaataattggtaccacat |
31607611 |
T |
|
| Q |
201 |
ttgcttgattccttgacctat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31607610 |
ttgcttgattccttgacctat |
31607590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 39724523 - 39724577
Alignment:
| Q |
25 |
tctccatcaccccataatacataagcttcttccccatgagcagcatcatcaccaa |
79 |
Q |
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||||||||||||||||| |||||||||||||||||||| | |||||||| |||| |
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| T |
39724523 |
tctccatcaccccataaagcataagcttcttccccatgaactgcatcatccccaa |
39724577 |
T |
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